RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 CCNYL2Q5T2Q4 361 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 Q6ZS92 163 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 ANKRD37Q7Z713 158 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 CLNKQ7Z7G1 428 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 GPR180Q86V85 440 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 METTL4Q8N3J2 472 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 ZADH2Q8N4Q0 377 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 C1orf52Q8N6N3 182 aaKnown RBP16.7■□□□□ 0.26
CLN3-247ENST00000636351 SH3GL2Q99962 352 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 ZNF717Q9BY31 904 aaPredicted RBP16.7■□□□□ 0.26
CLN3-247ENST00000636351 DDX31Q9H8H2 851 aaKnown RBP16.7■□□□□ 0.26
CLN3-247ENST00000636351 ZNF160Q9HCG1 818 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 ATP13A2Q9NQ11 1180 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 RIC8BQ9NVN3 520 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 PCDHGA10Q9Y5H3 936 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 IGHV3-20A0A0C4DH32 117 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 HMGB1P1B2RPK0 211 aaPredicted RBP16.69■□□□□ 0.26
CLN3-247ENST00000636351 TMEM233B4DJY2 109 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 TMPRSS11DO60235 418 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 HPP00738 406 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 NR2F6P10588 404 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 COX6A1P12074 109 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 ITGA3P26006 1051 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 TLX1P31314 330 aaPredicted RBP16.69■□□□□ 0.26
CLN3-247ENST00000636351 HNRNPFP52597 415 aaKnown RBP16.69■□□□□ 0.26
CLN3-247ENST00000636351 MAPK12P53778 367 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 HNRNPH2P55795 449 aaKnown RBP16.69■□□□□ 0.26
CLN3-247ENST00000636351 SOX8P57073 446 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 WDR4P57081 412 aaKnown RBP16.69■□□□□ 0.26
CLN3-247ENST00000636351 OR4D2P58180 307 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 ABCE1P61221 599 aaKnown RBP16.69■□□□□ 0.26
CLN3-247ENST00000636351 TNFRSF17Q02223 184 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 ACSM2AQ08AH3 577 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 GALNT1Q10472 559 aaPredicted RBP16.69■□□□□ 0.26
CLN3-247ENST00000636351 ACSM2BQ68CK6 577 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 TMEM205Q6UW68 189 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 CPEB2Q7Z5Q1 589 aaKnown RBP16.69■□□□□ 0.26
CLN3-247ENST00000636351 DDIASQ8IXT1 998 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 ZNF595Q8IYB9 648 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 TMEM52Q8NDY8 209 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 PLPP5Q8NEB5 264 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 WDR41Q9HAD4 459 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 MS4A12Q9NXJ0 267 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 KCMF1Q9P0J7 381 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 ADAM29Q9UKF5 820 aa16.69■□□□□ 0.26
CLN3-247ENST00000636351 IGHV1-45A0A0A0MS14 117 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 CYR61O00622 381 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 LYPLA1O75608 230 aaPredicted RBP16.68■□□□□ 0.26
CLN3-247ENST00000636351 SEC24DO94855 1032 aaPredicted RBP16.68■□□□□ 0.26
CLN3-247ENST00000636351 GRK2P25098 689 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 SLC18A1P54219 525 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 TBL3Q12788 808 aaKnown RBP16.68■□□□□ 0.26
CLN3-247ENST00000636351 AIMP2Q13155 320 aaKnown RBP16.68■□□□□ 0.26
CLN3-247ENST00000636351 STX3Q13277 289 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 PCOLCEQ15113 449 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 SPIN4Q56A73 249 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 SFT2D3Q587I9 215 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 IRAK1BP1Q5VVH5 260 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 KANK2Q63ZY3 851 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 NDUFAF7Q7L592 441 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 SCUBE1Q8IWY4 988 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 PARP9Q8IXQ6 854 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 TWIST2Q8WVJ9 160 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 BARD1Q99728 777 aaKnown RBP16.68■□□□□ 0.26
CLN3-247ENST00000636351 NECTIN3Q9NQS3 549 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 TRAF6Q9Y4K3 522 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 ATG4BQ9Y4P1 393 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 CSAG2Q9Y5P2 127 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 PTGDR2Q9Y5Y4 395 aa16.68■□□□□ 0.26
CLN3-247ENST00000636351 LOC102723996A0A087X1L8 192 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 SLC28A1O00337 649 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 RGS14O43566 566 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 ITM2AO43736 263 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 PCDH7O60245 1069 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 SKAP2O75563 359 aaPredicted RBP16.67■□□□□ 0.26
CLN3-247ENST00000636351 PRKRAO75569 313 aaKnown RBP16.67■□□□□ 0.26
CLN3-247ENST00000636351 AIFM1O95831 613 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 TPP2P29144 1249 aaPredicted RBP16.67■□□□□ 0.26
CLN3-247ENST00000636351 ARRB2P32121 409 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 SLC1A6P48664 564 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 HSD17B7P56937 341 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 ID2Q02363 134 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 STX4Q12846 297 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 CES4AQ5XG92 561 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 C18orf63Q68DL7 685 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 MRM1Q6IN84 353 aaKnown RBP16.67■□□□□ 0.26
CLN3-247ENST00000636351 PAPD4Q6PIY7 484 aaKnown RBP16.67■□□□□ 0.26
CLN3-247ENST00000636351 CLYBLQ8N0X4 340 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 OR6Y1Q8NGX8 325 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 APIPQ96GX9 242 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 LPAR4Q99677 370 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 WDR77Q9BQA1 342 aaPredicted RBP16.67■□□□□ 0.26
CLN3-247ENST00000636351 EBPLQ9BY08 206 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 ZNF700Q9H0M5 742 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 RPF2Q9H7B2 306 aaKnown RBP16.67■□□□□ 0.26
CLN3-247ENST00000636351 ZNF446Q9NWS9 450 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 ASB4Q9Y574 426 aa16.67■□□□□ 0.26
CLN3-247ENST00000636351 MYOCOSA0A1B0GUC4 107 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 GNG14A0A1W2PPG7 69 aa16.66■□□□□ 0.26
CLN3-247ENST00000636351 SERTM1A2A2V5 107 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 167.7 ms