RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FAM219BQ5XKK7 198 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 ACSM2BQ68CK6 577 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 OR52E8Q6IFG1 317 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 SCIMPQ6UWF3 145 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 TRIM46Q7Z4K8 759 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 CUZD1Q86UP6 607 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 AMER2Q8N7J2 671 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 OR14A16Q8NHC5 309 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 PPP1R14CQ8TAE6 165 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 DGAT2Q96PD7 388 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 ILKAPQ9H0C8 392 aaPredicted RBP19.35■□□□□ 0.69
CLN3-240ENST00000631023 ARGLU1Q9NWB6 273 aaPredicted RBP19.35■□□□□ 0.69
CLN3-240ENST00000631023 ABI3Q9P2A4 366 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 PPIEQ9UNP9 301 aaKnown RBP19.35■□□□□ 0.69
CLN3-240ENST00000631023 GLOD5A6NK44 160 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 TTLL8A6PVC2 850 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 GPR75O95800 540 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 CHEK2O96017 543 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 SERPINB4P48594 390 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 CLCN2P51788 898 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 PLIN5Q00G26 463 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 ARL13AQ5H913 290 aaPredicted RBP19.34■□□□□ 0.69
CLN3-240ENST00000631023 COLEC12Q5KU26 742 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 ACER2Q5QJU3 275 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 Q6ZS92 163 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 OR4N5Q8IXE1 308 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 MORN4Q8NDC4 146 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 HAS2Q92819 552 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 VMP1Q96GC9 406 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 PELOQ9BRX2 385 aaKnown RBP19.34■□□□□ 0.69
CLN3-240ENST00000631023 RNF32Q9H0A6 362 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 TEX10Q9NXF1 929 aaPredicted RBP19.34■□□□□ 0.69
CLN3-240ENST00000631023 MCM8Q9UJA3 840 aa19.34■□□□□ 0.69
CLN3-240ENST00000631023 MYOCOSA0A1B0GUC4 107 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 C17orf105B2RV13 164 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 BIRC5O15392 142 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 PRKRAO75569 313 aaKnown RBP19.33■□□□□ 0.69
CLN3-240ENST00000631023 FGF4P08620 206 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 STT3AP46977 705 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 TLR1Q15399 786 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 PLEKHN1Q494U1 663 aaPredicted RBP19.33■□□□□ 0.69
CLN3-240ENST00000631023 CLEC6AQ6EIG7 209 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 ZCCHC23Q6ZST2 131 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 LGI4Q8N135 537 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 PTPMT1Q8WUK0 201 aaPredicted RBP19.33■□□□□ 0.69
CLN3-240ENST00000631023 FAIM2Q9BWQ8 316 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 DEFB126Q9BYW3 111 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 EPN3Q9H201 632 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 TNFRSF12AQ9NP84 129 aa19.33■□□□□ 0.69
CLN3-240ENST00000631023 GNG14A0A1W2PPG7 69 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 C1orf226A1L170 272 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 ALOX15P16050 662 aaPredicted RBP19.32■□□□□ 0.68
CLN3-240ENST00000631023 PIK3R1P27986 724 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 BTKQ06187 659 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 FCRLBQ6BAA4 426 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 RPS19BP1Q86WX3 136 aaKnown RBP19.32■□□□□ 0.68
CLN3-240ENST00000631023 CRLF3Q8IUI8 442 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 ST13P4Q8IZP2 240 aaPredicted RBP19.32■□□□□ 0.68
CLN3-240ENST00000631023 CLYBLQ8N0X4 340 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 KIF2BQ8N4N8 673 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 APCDD1LQ8NCL9 501 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 OR4K14Q8NGD5 310 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 NCLNQ969V3 563 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 TM4SF18Q96CE8 201 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 APIPQ96GX9 242 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 TMBIM4Q9HC24 238 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 SIRT5Q9NXA8 310 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 PLA2G3Q9NZ20 509 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 PSME2Q9UL46 239 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 PCDHA9Q9Y5H5 950 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 SVILO95425 2214 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 TRBV11-1A0A0K0K1C0 115 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 SLC28A1O00337 649 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 CDK2AP1O14519 115 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 PGRMC2O15173 223 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 PCDH7O60245 1069 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 OR10H2O60403 315 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 SORBS2O94875 1100 aaKnown RBP19.32■□□□□ 0.68
CLN3-240ENST00000631023 WDPCPO95876 746 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 CHRNGP07510 517 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 PLA2G2AP14555 144 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 GPR143P51810 404 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 TLE1Q04724 770 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 GALNT18Q6P9A2 607 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 METTL2AQ96IZ6 378 aaKnown RBP19.32■□□□□ 0.68
CLN3-240ENST00000631023 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLN3-240ENST00000631023 CDCP1Q9H5V8 836 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 FIS1Q9Y3D6 152 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 TRAF6Q9Y4K3 522 aa19.32■□□□□ 0.68
CLN3-240ENST00000631023 WDR91A4D1P6 747 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 RGS14O43566 566 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 RSL1D1O76021 490 aaKnown RBP19.31■□□□□ 0.68
CLN3-240ENST00000631023 ZFAND5O76080 213 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 NEFHP12036 1026 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 GSTM5P46439 218 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 ZNF169Q14929 603 aaPredicted RBP19.31■□□□□ 0.68
CLN3-240ENST00000631023 KANK2Q63ZY3 851 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 ART5Q96L15 291 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 OR8D2Q9GZM6 311 aa19.31■□□□□ 0.68
CLN3-240ENST00000631023 LUZP4Q9P127 313 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms