RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 ABHD17CQ6PCB6 329 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 ADGRD1Q6QNK2 874 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 SLCO4C1Q6ZQN7 724 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 FRA10AC1Q70Z53 315 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 P3H2Q8IVL5 708 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 C9orf40Q8IXQ3 194 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 LRRC25Q8N386 305 aaPredicted RBP13.5□□□□□ -0.25
PNKP-218ENST00000625299 OR10G3Q8NGC4 313 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 PAQR8Q8TEZ7 354 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 ZNF721Q8TF20 911 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 MAGOHBQ96A72 148 aaKnown RBP13.5□□□□□ -0.25
PNKP-218ENST00000625299 SPACA9Q96E40 222 aaPredicted RBP13.5□□□□□ -0.25
PNKP-218ENST00000625299 HSPBAP1Q96EW2 488 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 GAL3ST4Q96RP7 486 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 TRIB1Q96RU8 372 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 ACKR4Q9NPB9 350 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 CAMK2AQ9UQM7 478 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 VWA7Q9Y334 891 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 RTTNQ86VV8 2226 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 CLGNO14967 610 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 CLEC3AO75596 197 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 TRAPPC6AO75865 159 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 HPDP32754 393 aaPredicted RBP13.49□□□□□ -0.25
PNKP-218ENST00000625299 TIMP3P35625 211 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 MSH2P43246 934 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 TGM3Q08188 693 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 CRYZQ08257 329 aaKnown RBP13.49□□□□□ -0.25
PNKP-218ENST00000625299 FAM45BPQ6NSW5 357 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 POMZP3Q6PJE2 187 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 OR4N5Q8IXE1 308 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 NAT8LQ8N9F0 302 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 SPC24Q8NBT2 197 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 FAM45AQ8TCE6 357 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 DOK4Q8TEW6 326 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 DGAT2Q96PD7 388 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 F2RL3Q96RI0 385 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 MAPKAP1Q9BPZ7 522 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 DOHHQ9BU89 302 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 SH2D2AQ9NP31 389 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 LZTFL1Q9NQ48 299 aa13.49□□□□□ -0.25
PNKP-218ENST00000625299 NCF1BA6NI72 391 aaPredicted RBP13.48□□□□□ -0.25
PNKP-218ENST00000625299 NCF1CA8MVU1 366 aaPredicted RBP13.48□□□□□ -0.25
PNKP-218ENST00000625299 H7C1Q1 480 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 ARHGEF9O43307 516 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 TBX6O95947 436 aaPredicted RBP13.48□□□□□ -0.25
PNKP-218ENST00000625299 HRGP04196 525 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 NCF1P14598 390 aaPredicted RBP13.48□□□□□ -0.25
PNKP-218ENST00000625299 GSTM2P28161 218 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 SORDQ00796 357 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 ZNF460Q14592 562 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 ADPRMQ3LIE5 342 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 SPANXN3Q5MJ09 141 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 VN1R5Q7Z5H4 357 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 CNTN4Q8IWV2 1026 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 CIARTQ8N365 385 aaPredicted RBP13.48□□□□□ -0.25
PNKP-218ENST00000625299 RASGEF1CQ8N431 466 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 NUBPLQ8TB37 319 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 PPWD1Q96BP3 646 aaKnown RBP13.48□□□□□ -0.25
PNKP-218ENST00000625299 CERS2Q96G23 380 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 SENP5Q96HI0 755 aaPredicted RBP13.48□□□□□ -0.25
PNKP-218ENST00000625299 ZNF597Q96LX8 424 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 TIMP4Q99727 224 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 PROK2Q9HC23 129 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 QPCTLQ9NXS2 382 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 CNIH4Q9P003 139 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 SPACA6W5XKT8 324 aa13.48□□□□□ -0.25
PNKP-218ENST00000625299 TLN2Q9Y4G6 2542 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 A0A1W2PPR1 153 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 HRKO00198 91 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 RTCAO00442 366 aaKnown RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 DYRK3O43781 588 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 SH3BGRLO75368 114 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 TTC4O95801 387 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 ZNF37AP17032 561 aaPredicted RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 CPN2P22792 545 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 KCNC1P48547 511 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 HNMTP50135 292 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 TBL3Q12788 808 aaKnown RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 TOMM20Q15388 145 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 TSNQ15631 228 aaKnown RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 CCDC137Q6PK04 289 aaKnown RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 LYPD8Q6UX82 237 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 ZNF793Q6ZN11 406 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 PPIL6Q8IXY8 311 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 PM20D2Q8IYS1 436 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 ANKRD9Q96BM1 317 aaPredicted RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 CFAP36Q96G28 342 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 PDLIM5Q96HC4 596 aaKnown RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 COX4I2Q96KJ9 171 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 Q96MF0 132 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 DOCK7Q96N67 2140 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 KCNC2Q96PR1 638 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 WDR83Q9BRX9 315 aaKnown RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 LYRM4Q9HD34 91 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 PRDM7Q9NQW5 492 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 CORO1CQ9ULV4 474 aaPredicted RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 SLC6A5Q9Y345 797 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 OARD1Q9Y530 152 aa13.47□□□□□ -0.25
PNKP-218ENST00000625299 CHCHD2Q9Y6H1 151 aaPredicted RBP13.47□□□□□ -0.25
PNKP-218ENST00000625299 ARID1AO14497 2285 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms