RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 MS4A13Q5J8X5 152 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 CD276Q5ZPR3 534 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 ZNF57Q68EA5 555 aaPredicted RBP10.33□□□□□ -0.76
UPF3A-212ENST00000619079 PTRHD1Q6GMV3 140 aaKnown RBP10.33□□□□□ -0.76
UPF3A-212ENST00000619079 KIAA1324Q6UXG2 1013 aaKnown RBP10.33□□□□□ -0.76
UPF3A-212ENST00000619079 CERS6Q6ZMG9 384 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 USP30Q70CQ3 517 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 MRPL10Q7Z7H8 261 aaKnown RBP10.33□□□□□ -0.76
UPF3A-212ENST00000619079 LAPTM4BQ86VI4 370 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 SYT12Q8IV01 421 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 ADGRF3Q8IZF5 1079 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 C3orf58Q8NDZ4 430 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 VPS37AQ8NEZ2 397 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 MDGA1Q8NFP4 955 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 GIMAP1Q8WWP7 306 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 GEMIN6Q8WXD5 167 aaKnown RBP10.33□□□□□ -0.76
UPF3A-212ENST00000619079 GTPBP3Q969Y2 492 aaKnown RBP10.33□□□□□ -0.76
UPF3A-212ENST00000619079 MGME1Q9BQP7 344 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 GSX2Q9BZM3 304 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 RDH14Q9HBH5 336 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 TMLHEQ9NVH6 421 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 NDOR1Q9UHB4 597 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 KIF25Q9UIL4 384 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 INSL6Q9Y581 213 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 RAI2Q9Y5P3 530 aa10.33□□□□□ -0.76
UPF3A-212ENST00000619079 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.32□□□□□ -0.76
UPF3A-212ENST00000619079 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.32□□□□□ -0.76
UPF3A-212ENST00000619079 A8MUA0 341 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 WWP2O00308 870 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 FZD6O60353 706 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 PLOD3O60568 738 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 SLC19A2O60779 497 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 CPSF4O95639 269 aaKnown RBP10.32□□□□□ -0.76
UPF3A-212ENST00000619079 IFNA14P01570 189 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 HLA-EP13747 358 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 COX7A2P14406 83 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 C4BPBP20851 252 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 F8A1P23610 371 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 AQP1P29972 269 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 MAPKAPK2P49137 400 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 NFE2L1Q14494 772 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 CLLU1OSQ5K130 101 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 AQP11Q8NBQ7 271 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 ZBTB44Q8NCP5 570 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 MTFMTQ96DP5 389 aaKnown RBP10.32□□□□□ -0.76
UPF3A-212ENST00000619079 P2RY13Q9BPV8 354 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 B3GAT2Q9NPZ5 323 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 RDH8Q9NYR8 311 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 TAS2R7Q9NYW3 318 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 COMMD3Q9UBI1 195 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 ZNF222Q9UK12 451 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 SLC6A14Q9UN76 642 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 SNX11Q9Y5W9 270 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 A0A0A6YYJ9 748 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 TMEM229AB2RXF0 380 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 SCN2BO60939 215 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 ATG13O75143 517 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 GADD45GO95257 159 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 ADAP00813 363 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 SRCP12931 536 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 LIMS1P48059 325 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 AFF1P51825 1210 aaKnown RBP10.32□□□□□ -0.76
UPF3A-212ENST00000619079 WNT3P56703 355 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 TBX4P57082 545 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 C21orf58P58505 322 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 ZNF91Q05481 1191 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 CACNG1Q06432 222 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 LRRC74AQ0VAA2 488 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 RGNQ15493 299 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 SHEQ5VZ18 495 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 NOXRED1Q6NXP6 359 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 CASP12Q6UXS9 341 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 RTL4Q6ZR62 310 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 METTL23Q86XA0 190 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 SRFBP1Q8NEF9 429 aaKnown RBP10.32□□□□□ -0.76
UPF3A-212ENST00000619079 OR8J1Q8NGP2 316 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 PRR14Q9BWN1 585 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 SLC6A15Q9H2J7 730 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 ISYNA1Q9NPH2 558 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 ACSL5Q9ULC5 683 aa10.32□□□□□ -0.76
UPF3A-212ENST00000619079 DIMT1Q9UNQ2 313 aaKnown RBP10.32□□□□□ -0.76
UPF3A-212ENST00000619079 DSPPQ9NZW4 1301 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 IQCF5A8MTL0 148 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 A8MX80 341 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 PSIP1O75475 530 aaKnown RBP10.31□□□□□ -0.76
UPF3A-212ENST00000619079 THP07101 528 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 POU2F1P14859 743 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 MYOGP15173 224 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 ZNF7P17097 686 aaPredicted RBP10.31□□□□□ -0.76
UPF3A-212ENST00000619079 AMD1P17707 334 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 IGFBP6P24592 240 aaPredicted RBP10.31□□□□□ -0.76
UPF3A-212ENST00000619079 POU1F1P28069 291 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 FGF9P31371 208 aaPredicted RBP10.31□□□□□ -0.76
UPF3A-212ENST00000619079 XCR1P46094 333 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 GSTM5P46439 218 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 RBBP4Q09028 425 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 STK11Q15831 433 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 UGT8Q16880 541 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 CDKL4Q5MAI5 379 aa10.31□□□□□ -0.76
UPF3A-212ENST00000619079 QSOX2Q6ZRP7 698 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms