RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 KCNH6Q9H252 994 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 CACNA1EQ15878 2313 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 C12orf71A8MTZ7 269 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 H0Y8X5 98 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 SCO2O43819 266 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 ERN1O75460 977 aaKnown RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 IL3P08700 152 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 CTSKP43235 329 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 DUOXA1Q1HG43 343 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 KIAA1211LQ6NV74 962 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 ZNF517Q6ZMY9 492 aaPredicted RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 FAM129CQ86XR2 697 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 RNF130Q86XS8 419 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 RAB42Q8N4Z0 105 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 SLC38A4Q969I6 547 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 OMA1Q96E52 524 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 TRNT1Q96Q11 434 aaKnown RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 PHOX2BQ99453 314 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 ITPAQ9BY32 194 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 IRAK3Q9Y616 596 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 COL4A4P53420 1690 aaPredicted RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 TCF20Q9UGU0 1960 aaKnown RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 EDDM13A0A1B0GTR0 161 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 ERVH48-1M5A8F1 160 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 SPINT1O43278 529 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 KLF8O95600 359 aaPredicted RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 CSF2P04141 144 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 PRLHRP49683 370 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 SLAMF1Q13291 335 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 PNCKQ6P2M8 343 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 MEX3DQ86XN8 651 aaKnown RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 OR8J3Q8NGG0 315 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 OR9A1PQ8NGU1 263 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 VANGL1Q8TAA9 524 aaPredicted RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 TSPEARQ8WU66 669 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 PPCDCQ96CD2 204 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 PYURFQ96I23 114 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 RDH12Q96NR8 316 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 COPS4Q9BT78 406 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 CDADC1Q9BWV3 514 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 RERGLQ9H628 205 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 RUVBL1Q9Y265 456 aaKnown RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 DNMT3AQ9Y6K1 912 aaPredicted RBP13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 COL6A3P12111 3177 aa13.8□□□□□ -0.2
SHROOM1-208ENST00000617339 SLC5A10A0PJK1 596 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 PIPSLA2A3N6 862 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 J3KTA2 159 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 DSCR3O14972 297 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 SLC15A1P46059 708 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 CRISP3P54108 245 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 P2RX3P56373 397 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 TFF2Q03403 129 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 WSCD2Q2TBF2 565 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 Q5BKY6 102 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 ZDHHC20Q5W0Z9 365 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 ENPP7Q6UWV6 458 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 ZNF438Q7Z4V0 828 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 NATD1Q8N6N6 113 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 RIPOR3Q96MK2 946 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 KCNC2Q96PR1 638 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 ZNF717Q9BY31 904 aaPredicted RBP13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 MKRN2Q9H000 416 aaKnown RBP13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 TAS2R16Q9NYV7 291 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 RABL2BQ9UNT1 228 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 NAALAD2Q9Y3Q0 740 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 SPEF1Q9Y4P9 236 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 NEUROG3Q9Y4Z2 214 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 STON1Q9Y6Q2 735 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 CCDC88CQ9P219 2028 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 SCN8AQ9UQD0 1980 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 EPOPA6NHQ4 379 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 TSC22D2O75157 780 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 DNAJB5O75953 348 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 SOD1P00441 154 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 DAPP51397 102 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 ARHGDIAP52565 204 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 RAB8AP61006 207 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 TMIGD1Q6UXZ0 262 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 WDR53Q7Z5U6 358 aaPredicted RBP13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 TMEM145Q8NBT3 493 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 NFKBIDQ8NI38 313 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 APOL4Q9BPW4 351 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 DUSP21Q9H596 190 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 TRPC4Q9UBN4 977 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 TEKT2Q9UIF3 430 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 KCNE1BA0A087WTH5 132 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 A0A1W2PQ72 361 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 GSAPA4D1B5 854 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 PCP4L1A6NKN8 68 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 RYKP34925 604 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 DLX2Q07687 328 aaPredicted RBP13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 DMC1Q14565 340 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 RPS26P11Q5JNZ5 115 aaPredicted RBP13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 WFIKKN2Q8TEU8 576 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 RLN3Q8WXF3 142 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 GTPBP3Q969Y2 492 aaKnown RBP13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 CPPED1Q9BRF8 314 aaPredicted RBP13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 SLC35A5Q9BS91 424 aa13.79□□□□□ -0.2
SHROOM1-208ENST00000617339 TIGARQ9NQ88 270 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms