RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 PTPMT1Q8WUK0 201 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-215ENST00000601150 CHTF18Q8WVB6 975 aa15.73■□□□□ 0.11
TRIM28-215ENST00000601150 SREK1Q8WXA9 508 aaKnown RBP15.73■□□□□ 0.11
TRIM28-215ENST00000601150 DGAT2Q96PD7 388 aa15.73■□□□□ 0.11
TRIM28-215ENST00000601150 DEFB126Q9BYW3 111 aa15.73■□□□□ 0.11
TRIM28-215ENST00000601150 ACPTQ9BZG2 426 aa15.73■□□□□ 0.11
TRIM28-215ENST00000601150 TEX10Q9NXF1 929 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-215ENST00000601150 PCDHGA10Q9Y5H3 936 aa15.73■□□□□ 0.11
TRIM28-215ENST00000601150 TRBV11-1A0A0K0K1C0 115 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 OR5H15A6NDH6 313 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 GLOD5A6NK44 160 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 PYCARD-AS1I3L0S3 204 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 CTIFO43310 598 aaKnown RBP15.72■□□□□ 0.11
TRIM28-215ENST00000601150 GPR75O95800 540 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 F10P00742 488 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 MYZAPP0CAP1 466 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 COX7A2P14406 83 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 STT3AP46977 705 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 TNFSF10P50591 281 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 FOXK1P85037 733 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 PLIN5Q00G26 463 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 HMGCS1Q01581 520 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 NDUFAF5Q5TEU4 345 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 SCIMPQ6UWF3 145 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 EXOC3L1Q86VI1 746 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 RPS19BP1Q86WX3 136 aaKnown RBP15.72■□□□□ 0.11
TRIM28-215ENST00000601150 BEST3Q8N1M1 668 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 NCLNQ969V3 563 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 PGM2Q96G03 612 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 NPAS2Q99743 824 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 PELOQ9BRX2 385 aaKnown RBP15.72■□□□□ 0.11
TRIM28-215ENST00000601150 MECRQ9BV79 373 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 SHCBP1LQ9BZQ2 653 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.72■□□□□ 0.11
TRIM28-215ENST00000601150 CDCP1Q9H5V8 836 aa15.72■□□□□ 0.11
TRIM28-215ENST00000601150 SSU72Q9NP77 194 aaKnown RBP15.72■□□□□ 0.11
TRIM28-215ENST00000601150 TRAV17A0A0B4J275 112 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 WASHC1A8K0Z3 465 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 C17orf105B2RV13 164 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 MAN1A2O60476 641 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 NPHS1O60500 1241 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 UROSP10746 265 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 ALOX15P16050 662 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-215ENST00000601150 SERPINB3P29508 390 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 GPR143P51810 404 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 TRA2BP62995 288 aaKnown RBP15.71■□□□□ 0.11
TRIM28-215ENST00000601150 PRR30Q53SZ7 412 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-215ENST00000601150 SPIN4Q56A73 249 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 TNFAIP8L3Q5GJ75 292 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 BEND6Q5SZJ8 279 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-215ENST00000601150 ARMC10Q8N2F6 343 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 OR1N1Q8NGS0 311 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 SUN3Q8TAQ9 357 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 MIB2Q96AX9 1013 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 RBM18Q96H35 190 aaKnown RBP15.71■□□□□ 0.11
TRIM28-215ENST00000601150 UTP23Q9BRU9 249 aaKnown RBP15.71■□□□□ 0.11
TRIM28-215ENST00000601150 OR8D2Q9GZM6 311 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 TNFRSF12AQ9NP84 129 aa15.71■□□□□ 0.11
TRIM28-215ENST00000601150 ZNF223Q9UK11 482 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-215ENST00000601150 HELZ2Q9BYK8 2649 aaKnown RBP15.71■□□□□ 0.11
TRIM28-215ENST00000601150 SHANK1Q9Y566 2161 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 GABRR3A8MPY1 467 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 CDK2AP1O14519 115 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 PGRMC2O15173 223 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 DYRK3O43781 588 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 ZFAND5O76080 213 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 WISP1O95388 367 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 DDAH2O95865 285 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 BPGMP07738 259 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 PIK3R1P27986 724 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 ETV4P43268 484 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 MLF1P58340 268 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 ACSM2AQ08AH3 577 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 IGFBP7Q16270 282 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 IMPG1Q17R60 797 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 SPDYAQ5MJ70 313 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 ACSM2BQ68CK6 577 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 TRIM46Q7Z4K8 759 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 ST13P4Q8IZP2 240 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-215ENST00000601150 CISD2Q8N5K1 135 aaKnown RBP15.7■□□□□ 0.1
TRIM28-215ENST00000601150 SLC2A12Q8TD20 617 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 UCN3Q969E3 161 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 ZBTB9Q96C00 473 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 TM4SF18Q96CE8 201 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 SNRNP40Q96DI7 357 aaKnown RBP15.7■□□□□ 0.1
TRIM28-215ENST00000601150 STMN4Q9H169 189 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-215ENST00000601150 EML4Q9HC35 981 aaKnown RBP15.7■□□□□ 0.1
TRIM28-215ENST00000601150 RRAGDQ9NQL2 400 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-215ENST00000601150 MAP10Q9P2G4 905 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 MCM8Q9UJA3 840 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 PCDHA9Q9Y5H5 950 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 ACTL7BQ9Y614 415 aa15.7■□□□□ 0.1
TRIM28-215ENST00000601150 CROCCQ5TZA2 2017 aa15.69■□□□□ 0.1
TRIM28-215ENST00000601150 C1orf226A1L170 272 aa15.69■□□□□ 0.1
TRIM28-215ENST00000601150 FCHO1O14526 889 aa15.69■□□□□ 0.1
TRIM28-215ENST00000601150 AZIN1O14977 448 aa15.69■□□□□ 0.1
TRIM28-215ENST00000601150 TM9SF1O15321 606 aa15.69■□□□□ 0.1
TRIM28-215ENST00000601150 PCDH7O60245 1069 aa15.69■□□□□ 0.1
TRIM28-215ENST00000601150 OR10H2O60403 315 aa15.69■□□□□ 0.1
TRIM28-215ENST00000601150 PRAMEF2O60811 474 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms