RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PRR35P0CG20 571 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 KITP10721 976 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 DRD2P14416 443 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 FOLH1Q04609 750 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 ACTN3Q08043 901 aaPredicted RBP18.12■□□□□ 0.49
UPF1-209ENST00000600310 AIMP2Q13155 320 aaKnown RBP18.12■□□□□ 0.49
UPF1-209ENST00000600310 BIKQ13323 160 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 PAPD4Q6PIY7 484 aaKnown RBP18.12■□□□□ 0.49
UPF1-209ENST00000600310 WDR75Q8IWA0 830 aaKnown RBP18.12■□□□□ 0.49
UPF1-209ENST00000600310 OR4N5Q8IXE1 308 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 MMP21Q8N119 569 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.12■□□□□ 0.49
UPF1-209ENST00000600310 PPP1R36Q96LQ0 422 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 LPAR4Q99677 370 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 TUBB6Q9BUF5 446 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 TRIM55Q9BYV6 548 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 ZNF160Q9HCG1 818 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 MYNNQ9NPC7 610 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 ATP13A2Q9NQ11 1180 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 GIMAP2Q9UG22 337 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 CES1P1Q9UKY3 287 aa18.12■□□□□ 0.49
UPF1-209ENST00000600310 MASP2O00187 686 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 VPS4BO75351 444 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 SOX8P57073 446 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 ID2Q02363 134 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 CHAF1BQ13112 559 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 HEPACAMQ14CZ8 416 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 SMU1Q2TAY7 513 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 LINC00303Q3SY05 128 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 SLC48A1Q6P1K1 146 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 RIPOR1Q6ZS17 1223 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 CLEC1AQ8NC01 280 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 AKTIPQ9H8T0 292 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 ADAP2Q9NPF8 381 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 HEY2Q9UBP5 337 aa18.11■□□□□ 0.49
UPF1-209ENST00000600310 TRPC5OSA6NMA1 111 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 SEC24DO94855 1032 aaPredicted RBP18.1■□□□□ 0.49
UPF1-209ENST00000600310 ICAM2P13598 275 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 SDC1P18827 310 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 TACR1P25103 407 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 MAPK1P28482 360 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 EMX2Q04743 252 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 Q0VFX4 171 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 TERF2Q15554 542 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 EXT1Q16394 746 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 PLAG1Q6DJT9 500 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 FAM71E1Q6IPT2 247 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 IKBIPQ70UQ0 350 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 LRRC34Q8IZ02 419 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 TMEM132CQ8N3T6 1108 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 FNDC5Q8NAU1 212 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 OR4K14Q8NGD5 310 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 PNO1Q9NRX1 252 aaKnown RBP18.1■□□□□ 0.49
UPF1-209ENST00000600310 EHD3Q9NZN3 535 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 PSME2Q9UL46 239 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 ITPR1Q14643 2758 aa18.1■□□□□ 0.49
UPF1-209ENST00000600310 MYOCOSA0A1B0GUC4 107 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 SAGE2PA6NJ88 616 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 A8MUA0 341 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 SDHDO14521 159 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 ZNF195O14628 629 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 CEACAM4O75871 244 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 DNAJB5O75953 348 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 IFNA16P05015 189 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 BCKDHAP12694 445 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 DDCP20711 480 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 PIK3R1P27986 724 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 STT3AP46977 705 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 ALDH9A1P49189 494 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 CCL11P51671 97 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 POLE2P56282 527 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 SLC26A5P58743 744 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 C2orf80Q0P641 193 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 MAD2L1Q13257 205 aaPredicted RBP18.09■□□□□ 0.49
UPF1-209ENST00000600310 ELAVL1Q15717 326 aaKnown RBP18.09■□□□□ 0.49
UPF1-209ENST00000600310 LARP4Q71RC2 724 aaKnown RBP eCLIP18.09■□□□□ 0.49
UPF1-209ENST00000600310 PARP9Q8IXQ6 854 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 NFAM1Q8NET5 270 aaPredicted RBP18.09■□□□□ 0.49
UPF1-209ENST00000600310 EGLN2Q96KS0 407 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 DGAT2Q96PD7 388 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 PELOQ9BRX2 385 aaKnown RBP18.09■□□□□ 0.49
UPF1-209ENST00000600310 C5AR2Q9P296 337 aa18.09■□□□□ 0.49
UPF1-209ENST00000600310 EXO1Q9UQ84 846 aaKnown RBP18.09■□□□□ 0.49
UPF1-209ENST00000600310 BAHCC1Q9P281 2608 aa18.08■□□□□ 0.49
UPF1-209ENST00000600310 SCN2AQ99250 2005 aa18.08■□□□□ 0.49
UPF1-209ENST00000600310 SERPINA7P05543 415 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 SLC35E2P0CK97 266 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 PRPS2P11908 318 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 ALOX15P16050 662 aaPredicted RBP18.08■□□□□ 0.48
UPF1-209ENST00000600310 LBPP18428 481 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 ASMTP46597 345 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 PLIN5Q00G26 463 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 BTBD16Q32M84 506 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 IL23RQ5VWK5 629 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 FAM47EQ6ZV65 393 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 MAVSQ7Z434 540 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 KBTBD2Q8IY47 623 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 ST13P4Q8IZP2 240 aaPredicted RBP18.08■□□□□ 0.48
UPF1-209ENST00000600310 GALNT16Q8N428 558 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 CDC26Q8NHZ8 85 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms