RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 QPCTLQ9NXS2 382 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 ALKBH4Q9NXW9 302 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 ZNF629Q9UEG4 869 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 CNOT11Q9UKZ1 510 aaKnown RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 DYRK1BQ9Y463 629 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 OARD1Q9Y530 152 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 PSAT1Q9Y617 370 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 CHCHD2Q9Y6H1 151 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 ANKRD33BA6NCL7 494 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 SYNDIG1LA6NDD5 238 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 WASHC1A8K0Z3 465 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 C17orf105B2RV13 164 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 H2AFYO75367 372 aaKnown RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 SCELO95171 688 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 LY6G6DO95868 133 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 CLPSP04118 112 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 HRGP04196 525 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 P04436 131 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 INHBBP09529 407 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 NUDT7P0C024 238 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 FBXO45P0C2W1 286 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 ZNF37AP17032 561 aaPredicted RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 GNAZP19086 355 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 SAT1P21673 171 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 ATP5A1P25705 553 aaKnown RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 GSTM2P28161 218 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 CDC25BP30305 580 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 CASP2P42575 452 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 KCNC1P48547 511 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 HNMTP50135 292 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 TAS2R39P59534 338 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 ID2Q02363 134 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 CRYZQ08257 329 aaKnown RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 SERTAD2Q14140 314 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 DOC2AQ14183 400 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 ZNF460Q14592 562 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 TSNQ15631 228 aaKnown RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 ACSF3Q4G176 576 aaPredicted RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 NSUN5P2Q63ZY6 315 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 STEAP4Q687X5 459 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 VASNQ6EMK4 673 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 FAM45BPQ6NSW5 357 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 CCDC137Q6PK04 289 aaKnown RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 OR4N5Q8IXE1 308 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 PPIL6Q8IXY8 311 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 FBXW8Q8N3Y1 598 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 SLC15A4Q8N697 577 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 GPATCH11Q8N954 259 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 ACOT4Q8N9L9 421 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 LINC01560Q8TB33 94 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 FAM45AQ8TCE6 357 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 KIAA1191Q96A73 305 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 PPWD1Q96BP3 646 aaKnown RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 SPACA9Q96E40 222 aaPredicted RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 CERS2Q96G23 380 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 TMEM79Q9BSE2 394 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 PITHD1Q9GZP4 211 aaPredicted RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 PRDM14Q9GZV8 571 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 UBQLN3Q9H347 655 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 EHD1Q9H4M9 534 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 LDAHQ9H6V9 325 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 CNIH4Q9P003 139 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 FOXD3Q9UJU5 478 aaPredicted RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 CORO1CQ9ULV4 474 aaPredicted RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 MRPS33Q9Y291 106 aaKnown RBP5.61□□□□□ -1.51
VRK3-220ENST00000600259 IKBKGQ9Y6K9 419 aa5.61□□□□□ -1.51
VRK3-220ENST00000600259 MBD3L4A6NDZ8 208 aaPredicted RBP5.6□□□□□ -1.51
VRK3-220ENST00000600259 MBD3L3A6NE82 208 aaPredicted RBP5.6□□□□□ -1.51
VRK3-220ENST00000600259 NPEPPSL1A6NEC2 478 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 TUBAL3A6NHL2 446 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 ANKDD1BA6NHY2 528 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 MBD3L5A6NJ08 208 aaPredicted RBP5.6□□□□□ -1.51
VRK3-220ENST00000600259 CD8B2A6NJW9 211 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 RTCAO00442 366 aaKnown RBP5.6□□□□□ -1.51
VRK3-220ENST00000600259 DVL2O14641 736 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 DNALI1O14645 258 aaPredicted RBP5.6□□□□□ -1.51
VRK3-220ENST00000600259 TP73O15350 636 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 FGF17O60258 216 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 WDR47O94967 919 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 ACSL3O95573 720 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 HPNP05981 417 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 HEXAP06865 529 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 TNNI3P19429 210 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 BMP5P22003 454 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 TACR1P25103 407 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 SOX18P35713 384 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 ELK3P41970 407 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 STT3AP46977 705 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 TRPC1P48995 793 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 SLC37A1P57057 533 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 NKX6-1P78426 367 aaPredicted RBP5.6□□□□□ -1.51
VRK3-220ENST00000600259 SORDQ00796 357 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 PCDH1Q08174 1060 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 TBL3Q12788 808 aaKnown RBP5.6□□□□□ -1.51
VRK3-220ENST00000600259 STX4Q12846 297 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 CBLBQ13191 982 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 DUSP8Q13202 625 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 FRG1Q14331 258 aaKnown RBP5.6□□□□□ -1.51
VRK3-220ENST00000600259 TGFBIQ15582 683 aa5.6□□□□□ -1.51
VRK3-220ENST00000600259 NTRK2Q16620 822 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms