RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 TANKQ92844 425 aa9.08□□□□□ -0.96
VRK3-216ENST00000599342 ANKRD9Q96BM1 317 aaPredicted RBP9.08□□□□□ -0.96
VRK3-216ENST00000599342 RBM18Q96H35 190 aaKnown RBP9.08□□□□□ -0.96
VRK3-216ENST00000599342 SCYL1Q96KG9 808 aa9.08□□□□□ -0.96
VRK3-216ENST00000599342 SGCZQ96LD1 299 aa9.08□□□□□ -0.96
VRK3-216ENST00000599342 LURAP1Q96LR2 239 aa9.08□□□□□ -0.96
VRK3-216ENST00000599342 MTERF1Q99551 399 aaKnown RBP9.08□□□□□ -0.96
VRK3-216ENST00000599342 PELOQ9BRX2 385 aaKnown RBP9.08□□□□□ -0.96
VRK3-216ENST00000599342 SORBS1Q9BX66 1292 aaKnown RBP9.08□□□□□ -0.96
VRK3-216ENST00000599342 SNX15Q9NRS6 342 aa9.08□□□□□ -0.96
VRK3-216ENST00000599342 PLSCR2Q9NRY7 297 aa9.08□□□□□ -0.96
VRK3-216ENST00000599342 SACM1LQ9NTJ5 587 aa9.08□□□□□ -0.96
VRK3-216ENST00000599342 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.08□□□□□ -0.96
VRK3-216ENST00000599342 TNPO3Q9Y5L0 923 aaKnown RBP9.08□□□□□ -0.96
VRK3-216ENST00000599342 NCOA6Q14686 2063 aaPredicted RBP9.08□□□□□ -0.96
VRK3-216ENST00000599342 TEX15Q9BXT5 2789 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 CRYBG3Q68DQ2 2970 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 A0A096LPK6 155 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 IQANK1A0A1B0GTG1 560 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 ESYT3A0FGR9 886 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 PINLYPA6NC86 204 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 OR14I1A6ND48 311 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 FIGNL2A6NMB9 653 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 NPIPA2E9PIF3 369 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 NPIPA3F8WFD2 350 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 PLPP1O14494 284 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 OR10H2O60403 315 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 MTHFD2P13995 350 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 ALOX15P16050 662 aaPredicted RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 PTX3P26022 381 aaPredicted RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 TYK2P29597 1187 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 CHRNB4P30926 498 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 KIR3DL1P43629 444 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 ARFIP1P53367 373 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 RPS13P62277 151 aaKnown RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 IGLV3-21P80748 117 aaPredicted RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 SLC7A5Q01650 507 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 ASPHQ12797 758 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 TRADDQ15628 312 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 CPSF6Q16630 551 aaKnown RBP eCLIP9.07□□□□□ -0.96
VRK3-216ENST00000599342 MPEG1Q2M385 716 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 CYP20A1Q6UW02 462 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 SLC29A4Q7RTT9 530 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 ZNF572Q7Z3I7 529 aaPredicted RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 CENPLQ8N0S6 344 aaPredicted RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 ZCCHC7Q8N3Z6 543 aaKnown RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 FAM109AQ8N4B1 249 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 RNF175Q8N4F7 328 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 OR5M3Q8NGP4 307 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 NUBPLQ8TB37 319 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 SENP5Q96HI0 755 aaPredicted RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 SMC6Q96SB8 1091 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 SPOCK3Q9BQ16 436 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 CNPPD1Q9BV87 410 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 EXO5Q9H790 373 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 ZDHHC11Q9H8X9 412 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 WDR41Q9HAD4 459 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 IL1RL2Q9HB29 575 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 LYARQ9NX58 379 aaKnown RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 CPSF2Q9P2I0 782 aaKnown RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 MTRF1LQ9UGC7 380 aaKnown RBP9.07□□□□□ -0.96
VRK3-216ENST00000599342 TSC22D4Q9Y3Q8 395 aa9.07□□□□□ -0.96
VRK3-216ENST00000599342 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.07□□□□□ -0.96
VRK3-216ENST00000599342 CELSR2Q9HCU4 2923 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 A0A0G2JMM0 328 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 A0A1W2PPB8 328 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 A0A1W2PRS3 328 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 FAM90A27PA6NNH2 459 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 KIR3DP1A8MWS1 328 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 H0YIV9 168 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 BCKDKO14874 412 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 PRKRAO75569 313 aaKnown RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 GLSO94925 669 aaPredicted RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 KLHL2O95198 593 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 INHBAP08476 426 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 CCL3P10147 92 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 NR2F6P10588 404 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 MAGEA5P43359 124 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 DNASE1L1P49184 302 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 HNRNPH2P55795 449 aaKnown RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 HERVK_113P63132 956 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 ERVK-8P63133 956 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 KCNJ2P63252 427 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 TBL3Q12788 808 aaKnown RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 GTF2H2Q13888 395 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 PCBP2Q15366 365 aaKnown RBP eCLIP9.06□□□□□ -0.96
VRK3-216ENST00000599342 PIGGQ5H8A4 983 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 SLC22A10Q63ZE4 541 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 C18orf63Q68DL7 685 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 GTF2H2CQ6P1K8 395 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 METTL2BQ6P1Q9 378 aaKnown RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 MEX3BQ6ZN04 569 aaKnown RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 RNF111Q6ZNA4 994 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 ACAD11Q709F0 780 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 GOLGA7Q7Z5G4 137 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 NUDT13Q86X67 352 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 C9orf40Q8IXQ3 194 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 DND1Q8IYX4 353 aaKnown RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 ST13P4Q8IZP2 240 aaPredicted RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 ZNF295-AS1Q8N0V1 137 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms