RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 RUNDC3BQ96NL0 473 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 TRIB1Q96RU8 372 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 SERINC2Q96SA4 455 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 CSF3RQ99062 836 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 CCL19Q99731 98 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 DOHHQ9BU89 302 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 RYDENQ9NUL5 291 aaKnown RBP9.3□□□□□ -0.92
TRIM28-210ENST00000597618 GALNT8Q9NY28 637 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 DAPP1Q9UN19 280 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 CAMK2AQ9UQM7 478 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 KCNE2Q9Y6J6 123 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 LRIT2A6NDA9 550 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 SDR42E2A6NKP2 422 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 GUCA1CO95843 209 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 TMIGD3P0DMS9 266 aaPredicted RBP9.29□□□□□ -0.92
TRIM28-210ENST00000597618 MLNP12872 115 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 CERS1P27544 350 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 SERPINB3P29508 390 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 MAGEA6P43360 314 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 MTTPP55157 894 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 IL2P60568 153 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 TBCELQ5QJ74 424 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 TRIM40Q6P9F5 258 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 RAD9BQ6WBX8 426 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 SYDE1Q6ZW31 735 aaPredicted RBP9.29□□□□□ -0.92
TRIM28-210ENST00000597618 CAND1Q86VP6 1230 aaKnown RBP9.29□□□□□ -0.92
TRIM28-210ENST00000597618 OR2L5Q8NG80 312 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 OR10G3Q8NGC4 313 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 ZNF721Q8TF20 911 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 CCT6BQ92526 530 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 QRFPRQ96P65 431 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 SFXN3Q9BWM7 321 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 COPS7BQ9H9Q2 264 aaPredicted RBP9.29□□□□□ -0.92
TRIM28-210ENST00000597618 CALHM2Q9HA72 323 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 PROK2Q9HC23 129 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 XAB2Q9HCS7 855 aaKnown RBP9.29□□□□□ -0.92
TRIM28-210ENST00000597618 HOMER3Q9NSC5 361 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 NDRG3Q9UGV2 375 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 ZKSCAN5Q9Y2L8 839 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 TESMINQ9Y4I5 508 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 CHCHD2Q9Y6H1 151 aaPredicted RBP9.29□□□□□ -0.92
TRIM28-210ENST00000597618 CAPN6Q9Y6Q1 641 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 ANK2Q01484 3957 aa9.29□□□□□ -0.92
TRIM28-210ENST00000597618 MYOCOSA0A1B0GUC4 107 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 DYRK3O43781 588 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 TRAPPC6AO75865 159 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 ETHE1O95571 254 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 CNOT4O95628 575 aaKnown RBP9.28□□□□□ -0.92
TRIM28-210ENST00000597618 C1QAP02745 245 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 HPNP05981 417 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 FBXO45P0C2W1 286 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 MSH2P43246 934 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 RPL21P46778 160 aaKnown RBP9.28□□□□□ -0.92
TRIM28-210ENST00000597618 CDK9P50750 372 aaKnown RBP9.28□□□□□ -0.92
TRIM28-210ENST00000597618 PLA2G16P53816 162 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 TERF1P54274 439 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 CDKN2DP55273 166 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 RCAN2Q14206 197 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 ACKR1Q16570 336 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 ADPRMQ3LIE5 342 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 HSP90AA5PQ58FG0 334 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 NHSL2Q5HYW2 709 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 VASNQ6EMK4 673 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 LYPD8Q6UX82 237 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 TMIGD1Q6UXZ0 262 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 C20orf204Q6ZNR8 217 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 LUZP2Q86TE4 346 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 C9orf40Q8IXQ3 194 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 C2CD4AQ8NCU7 369 aaPredicted RBP9.28□□□□□ -0.92
TRIM28-210ENST00000597618 ZFP3Q96NJ6 502 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 REXO4Q9GZR2 422 aaKnown RBP9.28□□□□□ -0.92
TRIM28-210ENST00000597618 LYRM4Q9HD34 91 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 IARS2Q9NSE4 1012 aaKnown RBP9.28□□□□□ -0.92
TRIM28-210ENST00000597618 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.28□□□□□ -0.927e-7■□□□□ 8.2
TRIM28-210ENST00000597618 CNOT11Q9UKZ1 510 aaKnown RBP9.28□□□□□ -0.92
TRIM28-210ENST00000597618 SLC22A14Q9Y267 594 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 NPFFR2Q9Y5X5 522 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 IKBKGQ9Y6K9 419 aa9.28□□□□□ -0.92
TRIM28-210ENST00000597618 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-210ENST00000597618 ANKRD33BA6NCL7 494 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 LDB3O75112 727 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 H2AFYO75367 372 aaKnown RBP9.27□□□□□ -0.93
TRIM28-210ENST00000597618 TRIM3O75382 744 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-210ENST00000597618 CLEC3AO75596 197 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 IFNA2P01563 188 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 IGKV3-11P04433 115 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 C1GALT1C1LP0DN25 315 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 GNAZP19086 355 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 TGM3Q08188 693 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 PDAP1Q13442 181 aaKnown RBP9.27□□□□□ -0.93
TRIM28-210ENST00000597618 SLBPQ14493 270 aaKnown RBP eCLIP9.27□□□□□ -0.93
TRIM28-210ENST00000597618 RBM20Q5T481 1227 aaKnown RBP9.27□□□□□ -0.93
TRIM28-210ENST00000597618 ANKRD22Q5VYY1 191 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 ABHD17CQ6PCB6 329 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 PHC2Q8IXK0 858 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 KRT78Q8N1N4 520 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 C9orf106Q8NAJ2 232 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 RNF214Q8ND24 703 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 WDYHV1Q96HA8 205 aa9.27□□□□□ -0.93
TRIM28-210ENST00000597618 SENP5Q96HI0 755 aaPredicted RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms