RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ANKRD27Q96NW4 1050 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 PHF12Q96QT6 1004 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 TAAR9Q96RI9 348 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 GPATCH1Q9BRR8 931 aaKnown RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 THUMPD3Q9BV44 507 aaKnown RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 CADM1Q9BY67 442 aaKnown RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 PAIP1Q9H074 479 aaKnown RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 RAD21L1Q9H4I0 556 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 MKKSQ9NPJ1 570 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 SERHLQ9NQF3 203 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 DHCR7Q9UBM7 475 aaKnown RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 TRPC4Q9UBN4 977 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 PCDHGA7Q9Y5G6 932 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 MDC1Q14676 2089 aaKnown RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 OTOGLQ3ZCN5 2332 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 CUL9Q8IWT3 2517 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 CPNE3O75131 537 aaKnown RBP14.36□□□□□ -0.11
TRIM28-209ENST00000597423 DNAJB6O75190 326 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 CIB2O75838 187 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 SLITRK5O94991 958 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 MED26O95402 600 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 STAMBPO95630 424 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 KRT75O95678 551 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 C6orf47O95873 294 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 FHP07954 510 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 PORP16435 677 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-209ENST00000597423 SDHBP21912 280 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 FRKP42685 505 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-209ENST00000597423 OR1D4P47884 311 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 NCBP2P52298 156 aaKnown RBP eCLIP14.36□□□□□ -0.11
TRIM28-209ENST00000597423 OCA2Q04671 838 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 STX4Q12846 297 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 SLC13A2Q13183 592 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 SERTAD2Q14140 314 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 SPDYE7PQ495Y7 208 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 RUNDC3AQ59EK9 446 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 C6orf163Q5TEZ5 329 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 C1orf189Q5VU69 101 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 NANOGP8Q6NSW7 305 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 C8orf82Q6P1X6 216 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-209ENST00000597423 SCUBE1Q8IWY4 988 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 FBXW8Q8N3Y1 598 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 MOAP1Q96BY2 351 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 MIEF2Q96C03 454 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 AMDHD1Q96NU7 426 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 ECSITQ9BQ95 431 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 PELOQ9BRX2 385 aaKnown RBP14.36□□□□□ -0.11
TRIM28-209ENST00000597423 INPP5KQ9BT40 448 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 NANOGQ9H9S0 305 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 C3orf14Q9HBI5 128 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 PRTFDC1Q9NRG1 225 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 TOR4AQ9NXH8 423 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 BCAP29Q9UHQ4 241 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 MMACHCQ9Y4U1 282 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 PCDHB14Q9Y5E9 798 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 MAU2Q9Y6X3 613 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 LAMA1P25391 3075 aa14.36□□□□□ -0.11
TRIM28-209ENST00000597423 FAM227AF5H4B4 570 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 AGRPO00253 132 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 B4GALT2O60909 372 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 ONECUT2O95948 504 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 ABCB1P08183 1280 aaPredicted RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 CD63P08962 238 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 FTH1P19P0C7X4 201 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 CCL4P13236 92 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 UQCRC2P22695 453 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 SLC6A2P23975 617 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 FEN1P39748 380 aaKnown RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 XCR1P46094 333 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 PDX1P52945 283 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 SNRPNP63162 240 aaKnown RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 MAT1AQ00266 395 aaKnown RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 CAPRIN1Q14444 709 aaKnown RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 NKAIN1Q4KMZ8 207 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 HES3Q5TGS1 186 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 PRAMEF17Q5VTA0 474 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 SLCO6A1Q86UG4 719 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 TMPRSS12Q86WS5 348 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 C10orf67Q8IYJ2 551 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 CCDC116Q8IYX3 515 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 CLECL1Q8IZS7 167 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 LRRC25Q8N386 305 aaPredicted RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 METTL27Q8N6F8 245 aaPredicted RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 TNIP2Q8NFZ5 429 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 WDR36Q8NI36 951 aaKnown RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 RBM18Q96H35 190 aaKnown RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 ZNF681Q96N22 645 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 LRFN5Q96NI6 719 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 CSF3RQ99062 836 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 DDA1Q9BW61 102 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 SLAMF8Q9P0V8 285 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 C5AR2Q9P296 337 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 TMEM181Q9P2C4 612 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 SNX8Q9Y5X2 465 aa14.35□□□□□ -0.11
TRIM28-209ENST00000597423 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.35□□□□□ -0.11
TRIM28-209ENST00000597423 WDFY4Q6ZS81 3184 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 ASCC3Q8N3C0 2202 aaKnown RBP14.34□□□□□ -0.11
TRIM28-209ENST00000597423 SPAARA0A1B0GVQ0 90 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 MEN1O00255 615 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 CLIC1O00299 241 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms