RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CLDN8P56748 225 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 MC1RQ01726 317 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 TGM3Q08188 693 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 KLF10Q13118 480 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 SLAMF1Q13291 335 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 FAM53BQ14153 422 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 SQLEQ14534 574 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 IL11RAQ14626 422 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 HERC3Q15034 1050 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 PRSS53Q2L4Q9 553 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 DEFB109BQ30KR1 87 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 FAM214AQ32MH5 1076 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 PDCD4Q53EL6 469 aaKnown RBP8.9□□□□□ -0.98
TRIM28-208ENST00000597172 FAM71E1Q6IPT2 247 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 PWWP2BQ6NUJ5 590 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 TCTN3Q6NUS6 607 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 ABHD13Q7L211 337 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 PAGE2Q7Z2X7 111 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 BPHLQ86WA6 291 aaPredicted RBP8.9□□□□□ -0.98
TRIM28-208ENST00000597172 NUDT13Q86X67 352 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 RIMKLAQ8IXN7 391 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 GPR135Q8IZ08 494 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 KRTCAP2Q8N6L1 136 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 IL22RA1Q8N6P7 574 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 TTC29Q8NA56 475 aaPredicted RBP8.9□□□□□ -0.98
TRIM28-208ENST00000597172 SLC38A9Q8NBW4 561 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 OR5T3Q8NGG3 340 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 OR9I1Q8NGQ6 314 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 OR9A4Q8NGU2 314 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 CLHC1Q8NHS4 586 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 PMEPA1Q969W9 287 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 TSSK3Q96PN8 268 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 LRRC37BQ96QE4 947 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 SERINC2Q96SA4 455 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 CMKLR1Q99788 373 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 CTRCQ99895 268 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 MAPKAP1Q9BPZ7 522 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 FANCEQ9HB96 536 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 SLC52A3Q9NQ40 469 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 CUTCQ9NTM9 273 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 IRAK4Q9NWZ3 460 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 RARRES3Q9UL19 164 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 SLC5A6Q9Y289 635 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 NAALAD2Q9Y3Q0 740 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 MAP4K5Q9Y4K4 846 aa8.9□□□□□ -0.98
TRIM28-208ENST00000597172 ABCA4P78363 2273 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 A0A0A6YYC8 382 aaPredicted RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 GNG14A0A1W2PPG7 69 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 A0A1W2PR48 441 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 ZNF860A6NHJ4 632 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 CCT8L1PA6NM43 557 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 WASHC1A8K0Z3 465 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 GABRR3A8MPY1 467 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 C9JVG2 144 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 I3L1I5 382 aaPredicted RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 PSMD12O00232 456 aaPredicted RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 POLR1CO15160 346 aaPredicted RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 PROM1O43490 865 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 B3GALT2O43825 422 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 SLC22A3O75751 556 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 LRATO95237 230 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 NSA2O95478 260 aaKnown RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 PRKAR1AP10644 381 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 ZNF28P17035 718 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 PIK3R1P27986 724 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 LIM2P55344 173 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 C21orf58P58505 322 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 TAS2R50P59544 299 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 TRA2BP62995 288 aaKnown RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 OLR1P78380 273 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 IRX1P78414 480 aaPredicted RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 C2orf80Q0P641 193 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 SLC9A5Q14940 896 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 RPS6KA2Q15349 733 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 NDUFA9Q16795 377 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 MUM1Q2TAK8 710 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 AGKQ53H12 422 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 TMEM164Q5U3C3 297 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 YOD1Q5VVQ6 348 aaPredicted RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 FAM91A1Q658Y4 838 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 TTLL10Q6ZVT0 673 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 TRPM8Q7Z2W7 1104 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 CA13Q8N1Q1 262 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 MIER2Q8N344 545 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 METTL27Q8N6F8 245 aaPredicted RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 GFM2Q969S9 779 aaKnown RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 RNF31Q96EP0 1072 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 ROGDIQ9GZN7 287 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 ANKHQ9HCJ1 492 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 MYNNQ9NPC7 610 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 TEX10Q9NXF1 929 aaPredicted RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 SLC39A1Q9NY26 324 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 ZIM2Q9NZV7 527 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 DHCR7Q9UBM7 475 aaKnown RBP8.89□□□□□ -0.99
TRIM28-208ENST00000597172 FBXW2Q9UKT8 454 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 DAPP1Q9UN19 280 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 ATG4BQ9Y4P1 393 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 DCHS2Q6V1P9 2916 aa8.89□□□□□ -0.99
TRIM28-208ENST00000597172 FAM227AF5H4B4 570 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms