RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PSD4Q8NDX1 1056 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 UCN3Q969E3 161 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 TMEM125Q96AQ2 219 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 REPS1Q96D71 796 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 MAGED4Q96JG8 741 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 SCYL1Q96KG9 808 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 NTMT1Q9BV86 223 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 EPB41L4BQ9H329 900 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 RPF2Q9H7B2 306 aaKnown RBP12.11□□□□□ -0.47
LIG1-212ENST00000596549 DDX31Q9H8H2 851 aaKnown RBP12.11□□□□□ -0.47
LIG1-212ENST00000596549 PRM3Q9NNZ6 103 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 TEX10Q9NXF1 929 aaPredicted RBP12.11□□□□□ -0.47
LIG1-212ENST00000596549 PHF11Q9UIL8 331 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 PPT2Q9UMR5 302 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 YARS2Q9Y2Z4 477 aaKnown RBP12.11□□□□□ -0.47
LIG1-212ENST00000596549 ASB4Q9Y574 426 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 CRYBG3Q68DQ2 2970 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 A0A1W2PR48 441 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 A0A1W2PS29 197 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 A8MVJ9 347 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 PPP6CO00743 305 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 RIPK2O43353 540 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 ASNA1O43681 348 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 PEX1O43933 1283 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 AIFM1O95831 613 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 GBAP04062 536 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 FAM153BP0C7A2 387 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 COL6A2P12110 1019 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 GRNP28799 593 aaKnown RBP12.1□□□□□ -0.47
LIG1-212ENST00000596549 RNF4P78317 190 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 PHEXP78562 749 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.1□□□□□ -0.472e-9■□□□□ 9.2
LIG1-212ENST00000596549 FAM153CQ494X1 144 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 GGTA1PQ4G0N0 100 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 KRTCAP3Q53RY4 240 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 NUDT13Q86X67 352 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 GHDCQ8N2G8 530 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 CEP112Q8N8E3 955 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 ZFP62Q8NB50 900 aaPredicted RBP12.1□□□□□ -0.47
LIG1-212ENST00000596549 OR4F6Q8NGB9 312 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 OR8K3Q8NH51 312 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 C16orf52Q8NHV5 167 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 KIF18AQ8NI77 898 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 DOK4Q8TEW6 326 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 ZNF483Q8TF39 744 aaPredicted RBP12.1□□□□□ -0.47
LIG1-212ENST00000596549 PPWD1Q96BP3 646 aaKnown RBP12.1□□□□□ -0.47
LIG1-212ENST00000596549 DGAT2Q96PD7 388 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 CENPKQ9BS16 269 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 TXLNGYQ9BZA5 131 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 MRPL46Q9H2W6 279 aaKnown RBP12.1□□□□□ -0.47
LIG1-212ENST00000596549 SEMA4BQ9NPR2 832 aaPredicted RBP12.1□□□□□ -0.47
LIG1-212ENST00000596549 HPF1Q9NWY4 346 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 MS4A12Q9NXJ0 267 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 ZNF225Q9UK10 706 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 IKBKGQ9Y6K9 419 aa12.1□□□□□ -0.47
LIG1-212ENST00000596549 CACNA1CQ13936 2221 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 GLOD5A6NK44 160 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 FOXE1O00358 373 aaPredicted RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 TFECO14948 347 aaPredicted RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 PROM1O43490 865 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 HS6ST1O60243 411 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 SMIM24O75264 130 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 SEMA3DO95025 777 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 NADKO95544 446 aaPredicted RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 MLYCDO95822 493 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 CLPSP04118 112 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 TUBB4AP04350 444 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 SNRPAP09012 282 aaKnown RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 FAM58BPP0C7Q3 252 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 NR2F6P10588 404 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 TSPAN8P19075 237 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 TNNI3P19429 210 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 PTX3P26022 381 aaPredicted RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 ARL1P40616 181 aaPredicted RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 BUD31P41223 144 aaPredicted RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 CCNG1P51959 295 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 PLIN5Q00G26 463 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 CDSNQ15517 529 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 SPRED3Q2MJR0 410 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 CMPK2Q5EBM0 449 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 FRG2Q64ET8 278 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 LETMD1Q6P1Q0 360 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 IL20RBQ6UXL0 311 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 SPPL2CQ8IUH8 684 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 GPALPP1Q8IXQ4 340 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 POGLUT1Q8NBL1 392 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 MZB1Q8WU39 189 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 ASB15Q8WXK1 588 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 MTFMTQ96DP5 389 aaKnown RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 FBXL20Q96IG2 436 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 FRG2BQ96QU4 278 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 MRPL57Q9BQC6 102 aaKnown RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 C1QTNF3Q9BXJ4 246 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 MRPL1Q9BYD6 325 aaKnown RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 FARSBQ9NSD9 589 aaKnown RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 LYARQ9NX58 379 aaKnown RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 PSD3Q9NYI0 1048 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 TMEM216Q9P0N5 145 aa12.09□□□□□ -0.47
LIG1-212ENST00000596549 SUCOQ9UBS9 1254 aaKnown RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 TMCO1Q9UM00 188 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms