RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 HAS2Q92819 552 aa12.1□□□□□ -0.47
SCAF1-202ENST00000595242 ROPN1LQ96C74 230 aa12.1□□□□□ -0.47
SCAF1-202ENST00000595242 FBXL8Q96CD0 374 aa12.1□□□□□ -0.47
SCAF1-202ENST00000595242 LINC00615Q96LM1 132 aaPredicted RBP12.1□□□□□ -0.47
SCAF1-202ENST00000595242 NRTNQ99748 197 aa12.1□□□□□ -0.47
SCAF1-202ENST00000595242 MRPL1Q9BYD6 325 aaKnown RBP12.1□□□□□ -0.47
SCAF1-202ENST00000595242 ZCCHC2Q9C0B9 1178 aaKnown RBP12.1□□□□□ -0.47
SCAF1-202ENST00000595242 SLC52A3Q9NQ40 469 aa12.1□□□□□ -0.47
SCAF1-202ENST00000595242 ASIC5Q9NY37 505 aa12.1□□□□□ -0.47
SCAF1-202ENST00000595242 ZIM2Q9NZV7 527 aa12.1□□□□□ -0.47
SCAF1-202ENST00000595242 STOML1Q9UBI4 398 aa12.1□□□□□ -0.47
SCAF1-202ENST00000595242 CCL27Q9Y4X3 112 aa12.1□□□□□ -0.47
SCAF1-202ENST00000595242 C17orf113A0A1B0GUU1 675 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 MGAT4DA6NG13 374 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 NRP2O60462 931 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 WISP2O76076 250 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 F10P00742 488 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 FOSL1P15407 271 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 EPB42P16452 691 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 EPORP19235 508 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 ALAS2P22557 587 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 HMOX2P30519 316 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 ZFP36L2P47974 494 aaKnown RBP12.09□□□□□ -0.47
SCAF1-202ENST00000595242 GABRA4P48169 554 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 EMX2Q04743 252 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 SLC34A1Q06495 639 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 PCDH1Q08174 1060 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 HSPA14Q0VDF9 509 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 CCNIQ14094 377 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 BOP1Q14137 746 aaKnown RBP12.09□□□□□ -0.47
SCAF1-202ENST00000595242 RCAN2Q14206 197 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 CMPK2Q5EBM0 449 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 C6orf136Q5SQH8 315 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 SWT1Q5T5J6 900 aaKnown RBP12.09□□□□□ -0.47
SCAF1-202ENST00000595242 TLDC1Q6P9B6 456 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 PAOXQ6QHF9 649 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 BLOC1S3Q6QNY0 202 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 SHISA6Q6ZSJ9 500 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 NCCRP1Q6ZVX7 275 aaPredicted RBP12.09□□□□□ -0.47
SCAF1-202ENST00000595242 OVCH1Q7RTY7 1134 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 MILR1Q7Z6M3 343 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 TMEM200AQ86VY9 491 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 SLC22A15Q8IZD6 547 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 METTL6Q8TCB7 284 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 VPS50Q96JG6 964 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 NPAS2Q99743 824 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 CCM2Q9BSQ5 444 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.09□□□□□ -0.47
SCAF1-202ENST00000595242 WDR54Q9H977 334 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 DLL4Q9NR61 685 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 IRAK4Q9NWZ3 460 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 ARL15Q9NXU5 204 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 CCDC167Q9P0B6 97 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 PTGFRNQ9P2B2 879 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 FAM8A1Q9UBU6 413 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 GIMAP2Q9UG22 337 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 TSR3Q9UJK0 312 aaKnown RBP12.09□□□□□ -0.47
SCAF1-202ENST00000595242 RPH3AQ9Y2J0 694 aaPredicted RBP12.09□□□□□ -0.47
SCAF1-202ENST00000595242 NDUFAF1Q9Y375 327 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 ANGPTL3Q9Y5C1 460 aa12.09□□□□□ -0.47
SCAF1-202ENST00000595242 KCNE1BA0A087WTH5 132 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 C2orf74A8MZ97 194 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 SLC28A1O00337 649 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 MRASO14807 208 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 LIN7AO14910 233 aaPredicted RBP12.08□□□□□ -0.48
SCAF1-202ENST00000595242 LSM1O15116 133 aaKnown RBP12.08□□□□□ -0.48
SCAF1-202ENST00000595242 PDE5AO76074 875 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 HIST1H2AGP0C0S8 130 aaPredicted RBP12.08□□□□□ -0.48
SCAF1-202ENST00000595242 PCSK2P16519 638 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 HIST1H2ADP20671 130 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 PRPH2P23942 346 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 PSME3P61289 254 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 ZNF33BQ06732 778 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 CEACAM7Q14002 265 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 ZIC1Q15915 447 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 NKG7Q16617 165 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 SPATS1Q496A3 300 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 ATP6AP1LQ52LC2 224 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 TRIM46Q7Z4K8 759 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 FAM20CQ8IXL6 584 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 C19orf47Q8N9M1 422 aaKnown RBP12.08□□□□□ -0.48
SCAF1-202ENST00000595242 L3MBTL4Q8NA19 623 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 PCYOX1LQ8NBM8 494 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 OR9I1Q8NGQ6 314 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 OR2L2Q8NH16 312 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 MCOLN3Q8TDD5 553 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 CA5BP1Q8WTZ4 195 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 ATP6V1E2Q96A05 226 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 FKBP10Q96AY3 582 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 MAGED4Q96JG8 741 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 HIST1H2AHQ96KK5 128 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 PPP3R2Q96LZ3 170 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 CDK15Q96Q40 435 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 FERD3LQ96RJ6 166 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 SPSB2Q99619 263 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 HIST1H2AJQ99878 128 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 GPATCH1Q9BRR8 931 aaKnown RBP12.08□□□□□ -0.48
SCAF1-202ENST00000595242 H2AFJQ9BTM1 129 aa12.08□□□□□ -0.48
SCAF1-202ENST00000595242 SOX17Q9H6I2 414 aaPredicted RBP12.08□□□□□ -0.48
SCAF1-202ENST00000595242 ZNF160Q9HCG1 818 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms