RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 CUZD1Q86UP6 607 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 LGI4Q8N135 537 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 C7orf57Q8NEG2 295 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 OR14A16Q8NHC5 309 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 DNAJB14Q8TBM8 379 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 PTPMT1Q8WUK0 201 aaPredicted RBP13.59□□□□□ -0.23
VRK3-206ENST00000594090 CHTF18Q8WVB6 975 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 DAZLQ92904 295 aaKnown RBP13.59□□□□□ -0.23
VRK3-206ENST00000594090 NCLNQ969V3 563 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 VMP1Q96GC9 406 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 APIPQ96GX9 242 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 PLA2G3Q9NZ20 509 aa13.59□□□□□ -0.23
VRK3-206ENST00000594090 TRBV11-1A0A0K0K1C0 115 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 C17orf105B2RV13 164 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 J3QKU1 62 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 WDPCPO95876 746 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 F10P00742 488 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 CHRNGP07510 517 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 SERPINB3P29508 390 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 STT3AP46977 705 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 CLCN2P51788 898 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 PLIN5Q00G26 463 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 ZNF169Q14929 603 aaPredicted RBP13.58□□□□□ -0.24
VRK3-206ENST00000594090 TLR1Q15399 786 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 MEP1AQ16819 746 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 BEST3Q8N1M1 668 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 SREK1Q8WXA9 508 aaKnown RBP13.58□□□□□ -0.24
VRK3-206ENST00000594090 HAS2Q92819 552 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 UCN3Q969E3 161 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 DGAT2Q96PD7 388 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 STMN3Q9NZ72 180 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 MCM8Q9UJA3 840 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 ZNF223Q9UK11 482 aaPredicted RBP13.58□□□□□ -0.24
VRK3-206ENST00000594090 PCDHGA10Q9Y5H3 936 aa13.58□□□□□ -0.24
VRK3-206ENST00000594090 OR5H15A6NDH6 313 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 WASHC1A8K0Z3 465 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 PYCARD-AS1I3L0S3 204 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 AZIN1O14977 448 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 TM9SF1O15321 606 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 PCDH7O60245 1069 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 MAN1A2O60476 641 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 GUCY1B2O75343 617 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 GPR75O95800 540 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 COX7A2P14406 83 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 ALOX15P16050 662 aaPredicted RBP13.57□□□□□ -0.24
VRK3-206ENST00000594090 TNNI3P19429 210 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 SERPINB4P48594 390 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 TNFSF10P50591 281 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 TRA2BP62995 288 aaKnown RBP13.57□□□□□ -0.24
VRK3-206ENST00000594090 RAE1P78406 368 aaKnown RBP13.57□□□□□ -0.24
VRK3-206ENST00000594090 ACSM2AQ08AH3 577 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 BIKQ13323 160 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 IMPG1Q17R60 797 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 PRR30Q53SZ7 412 aaPredicted RBP13.57□□□□□ -0.24
VRK3-206ENST00000594090 ARL13AQ5H913 290 aaPredicted RBP13.57□□□□□ -0.24
VRK3-206ENST00000594090 ACSM2BQ68CK6 577 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 TRIM46Q7Z4K8 759 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 ST13P4Q8IZP2 240 aaPredicted RBP13.57□□□□□ -0.24
VRK3-206ENST00000594090 MORN4Q8NDC4 146 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 CATSPER1Q8NEC5 780 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 SLC2A12Q8TD20 617 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 TM4SF18Q96CE8 201 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 C11orf24Q96F05 449 aaPredicted RBP13.57□□□□□ -0.24
VRK3-206ENST00000594090 PKNOX2Q96KN3 472 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 DEFB126Q9BYW3 111 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 STMN4Q9H169 189 aaPredicted RBP13.57□□□□□ -0.24
VRK3-206ENST00000594090 CDCP1Q9H5V8 836 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 ABI3Q9P2A4 366 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 FIS1Q9Y3D6 152 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 PCDHA9Q9Y5H5 950 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 SPTA1P02549 2419 aa13.57□□□□□ -0.24
VRK3-206ENST00000594090 GABRR3A8MPY1 467 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 PGRMC2O15173 223 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 ZWINTO95229 277 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 DDAH2O95865 285 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 TIA1P31483 386 aaKnown RBP eCLIP13.56□□□□□ -0.24
VRK3-206ENST00000594090 SERPINB5P36952 375 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 CASP8Q14790 479 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 KANK2Q63ZY3 851 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 GALNT18Q6P9A2 607 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 DGAT2L6Q6ZPD8 337 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 RNF165Q6ZSG1 346 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 RPS19BP1Q86WX3 136 aaKnown RBP13.56□□□□□ -0.24
VRK3-206ENST00000594090 MMP21Q8N119 569 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 ARMC10Q8N2F6 343 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 ZNF321PQ8N8H1 164 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 OR1N1Q8NGS0 311 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 OR6Y1Q8NGX8 325 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 CPT1CQ8TCG5 803 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 PPWD1Q96BP3 646 aaKnown RBP13.56□□□□□ -0.24
VRK3-206ENST00000594090 RBM18Q96H35 190 aaKnown RBP13.56□□□□□ -0.24
VRK3-206ENST00000594090 PELOQ9BRX2 385 aaKnown RBP13.56□□□□□ -0.24
VRK3-206ENST00000594090 OR8D2Q9GZM6 311 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.56□□□□□ -0.24
VRK3-206ENST00000594090 EML4Q9HC35 981 aaKnown RBP13.56□□□□□ -0.24
VRK3-206ENST00000594090 SIRT5Q9NXA8 310 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 PTGDR2Q9Y5Y4 395 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 TRAV17A0A0B4J275 112 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 GNG14A0A1W2PPG7 69 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 A0A1W2PS29 197 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms