RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SOAT1P35610 550 aa2□□□□□ -2.09
VPS35-207ENST00000568191 MDH2P40926 338 aaKnown RBP2□□□□□ -2.09
VPS35-207ENST00000568191 FHITP49789 147 aa2□□□□□ -2.09
VPS35-207ENST00000568191 P2RY4P51582 365 aa2□□□□□ -2.09
VPS35-207ENST00000568191 EMC2Q15006 297 aa2□□□□□ -2.09
VPS35-207ENST00000568191 PPP1R3AQ16821 1122 aa2□□□□□ -2.09
VPS35-207ENST00000568191 ISXQ2M1V0 245 aa2□□□□□ -2.09
VPS35-207ENST00000568191 ODF2Q5BJF6 829 aa2□□□□□ -2.09
VPS35-207ENST00000568191 CELF3Q5SZQ8 465 aaKnown RBP2□□□□□ -2.09
VPS35-207ENST00000568191 MPP7Q5T2T1 576 aa2□□□□□ -2.09
VPS35-207ENST00000568191 NEPROQ6NW34 567 aa2□□□□□ -2.09
VPS35-207ENST00000568191 C2orf66Q6UXQ4 117 aa2□□□□□ -2.09
VPS35-207ENST00000568191 UXS1Q8NBZ7 420 aa2□□□□□ -2.09
VPS35-207ENST00000568191 LINC01006Q8NI28 216 aa2□□□□□ -2.09
VPS35-207ENST00000568191 GTSF1Q8WW33 167 aa2□□□□□ -2.09
VPS35-207ENST00000568191 C16orf58Q96GQ5 468 aa2□□□□□ -2.09
VPS35-207ENST00000568191 OR5M11Q96RB7 305 aa2□□□□□ -2.09
VPS35-207ENST00000568191 PRMT1Q99873 361 aaKnown RBP2□□□□□ -2.09
VPS35-207ENST00000568191 MINDY3Q9H8M7 445 aa2□□□□□ -2.09
VPS35-207ENST00000568191 EIF3KQ9UBQ5 218 aaKnown RBP2□□□□□ -2.09
VPS35-207ENST00000568191 CIDEBQ9UHD4 219 aa2□□□□□ -2.09
VPS35-207ENST00000568191 RNF24Q9Y225 148 aa2□□□□□ -2.09
VPS35-207ENST00000568191 TNRQ92752 1358 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 PFASO15067 1338 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 TRAV34A0A0B4J273 112 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 WI2-2373I1.2A0A1W2PRP0 233 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 ARHGEF37A1IGU5 675 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 ILVBLA1L0T0 632 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 HTR3EA5X5Y0 456 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 C5orf52A6NGY3 159 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 CCT8L1PA6NM43 557 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 ZNF724A8MTY0 619 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 DKC1O60832 514 aaKnown RBP eCLIP1.99□□□□□ -2.09
VPS35-207ENST00000568191 DUSP11O75319 330 aaKnown RBP1.99□□□□□ -2.09
VPS35-207ENST00000568191 RAD51DO75771 328 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 HOXC4P09017 264 aaPredicted RBP1.99□□□□□ -2.09
VPS35-207ENST00000568191 GIG44P09565 113 aaPredicted RBP1.99□□□□□ -2.09
VPS35-207ENST00000568191 CD1EP15812 388 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 RPA1P27694 616 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 ID1P41134 155 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 CAPZA1P52907 286 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 UCNP55089 124 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 KRTAP10-1P60331 282 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 GPR50Q13585 617 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 C17orf58Q2M2W7 97 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 C14orf28Q4W4Y0 310 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 ZNF658Q5TYW1 1059 aaPredicted RBP1.99□□□□□ -2.09
VPS35-207ENST00000568191 C1orf189Q5VU69 101 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 TATDN1Q6P1N9 297 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 PODNL1Q6PEZ8 512 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 DCLRE1AQ6PJP8 1040 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 NHLRC1Q6VVB1 395 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 SPATA19Q7Z5L4 167 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 CCDC71Q8IV32 467 aaPredicted RBP1.99□□□□□ -2.09
VPS35-207ENST00000568191 UBQLNLQ8IYU4 475 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 GVQW1Q8N7I0 195 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 GPR148Q8TDV2 347 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 UBLCP1Q8WVY7 318 aaPredicted RBP1.99□□□□□ -2.09
VPS35-207ENST00000568191 FAF2Q96CS3 445 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 NUS1Q96E22 293 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 ZNF799Q96GE5 643 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 CCT8L2Q96SF2 557 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 BAG1Q99933 345 aaPredicted RBP1.99□□□□□ -2.09
VPS35-207ENST00000568191 C17orf62Q9BQA9 187 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 IDI2Q9BXS1 227 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 TNMDQ9H2S6 317 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 MYOZ2Q9NPC6 264 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 FAM212BQ9NTI7 297 aaPredicted RBP1.99□□□□□ -2.09
VPS35-207ENST00000568191 IMPAD1Q9NX62 359 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 RPS6KB2Q9UBS0 482 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 SEC14L4Q9UDX3 406 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 TMED7Q9Y3B3 224 aa1.99□□□□□ -2.09
VPS35-207ENST00000568191 KIAA1217Q5T5P2 1943 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 ANKDD1BA6NHY2 528 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 EFCAB7A8K855 629 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 SLC33A1O00400 549 aaPredicted RBP1.98□□□□□ -2.09
VPS35-207ENST00000568191 CTDSPLO15194 276 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 KIAA0513O60268 411 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 LETM1O95202 739 aaPredicted RBP1.98□□□□□ -2.09
VPS35-207ENST00000568191 HSPA4LO95757 839 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 FHP07954 510 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 ZNF853P0CG23 659 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 ZNF32P17041 273 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 ELK1P19419 428 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 HMGCLP35914 325 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 TNFRSF4P43489 277 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 SLC3A1Q07837 685 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 MICAQ29983 383 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 ANKRD55Q3KP44 614 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 LCE1CQ5T751 118 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 LCE1BQ5T7P3 118 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 DDI2Q5TDH0 399 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 CASC4Q6P4E1 433 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 SIGLEC15Q6ZMC9 328 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 TIFABQ6ZNK6 161 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 GLRX5Q86SX6 157 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 CACUL1Q86Y37 369 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 APOBEC3FQ8IUX4 373 aaKnown RBP1.98□□□□□ -2.09
VPS35-207ENST00000568191 RNF175Q8N4F7 328 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 KIAA0895Q8NCT3 520 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms