RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MPEG1Q2M385 716 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 GXYLT1Q4G148 440 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 PIGGQ5H8A4 983 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 LIPJQ5W064 366 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 OPN5Q6U736 354 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 GK5Q6ZS86 529 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 CENPLQ8N0S6 344 aaPredicted RBP14.88□□□□□ -0.03
CLN3-229ENST00000567963 RPRMLQ8N4K4 120 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 TEX9Q8N6V9 391 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 KCTD4Q8WVF5 259 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 ASB5Q8WWX0 329 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 RND1Q92730 232 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 TANKQ92844 425 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 RGMAQ96B86 450 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 PPWD1Q96BP3 646 aaKnown RBP14.88□□□□□ -0.03
CLN3-229ENST00000567963 RBM18Q96H35 190 aaKnown RBP14.88□□□□□ -0.03
CLN3-229ENST00000567963 SENP5Q96HI0 755 aaPredicted RBP14.88□□□□□ -0.03
CLN3-229ENST00000567963 DGAT2Q96PD7 388 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 MTERF1Q99551 399 aaKnown RBP14.88□□□□□ -0.03
CLN3-229ENST00000567963 TREX2Q9BQ50 279 aaPredicted RBP14.88□□□□□ -0.03
CLN3-229ENST00000567963 TSC22D4Q9Y3Q8 395 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 PHF3Q92576 2039 aaKnown RBP14.87□□□□□ -0.03
CLN3-229ENST00000567963 CELSR1Q9NYQ6 3014 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 A0A087X1B8 175 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 NPIPA2E9PIF3 369 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 NPIPA3F8WFD2 350 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 PLPP1O14494 284 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 IGKV3-11P04433 115 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 C2P06681 752 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 RAP1GDS1P52306 607 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 ARFIP1P53367 373 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 IRF9Q00978 393 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 ASPHQ12797 758 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 DDX39BQ13838 428 aaKnown RBP14.87□□□□□ -0.03
CLN3-229ENST00000567963 FAM83EQ2M2I3 478 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 DGAT2L6Q6ZPD8 337 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 FAM47EQ6ZV65 393 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 CCDC91Q7Z6B0 441 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 GPR180Q86V85 440 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 ZCCHC7Q8N3Z6 543 aaKnown RBP14.87□□□□□ -0.03
CLN3-229ENST00000567963 LILRB4Q8NHJ6 448 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 NUBPLQ8TB37 319 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 CENPKQ9BS16 269 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 IL1RL2Q9HB29 575 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 SACM1LQ9NTJ5 587 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 RNF6Q9Y252 685 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 ATG4BQ9Y4P1 393 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 ANGPTL3Q9Y5C1 460 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 PCDHGA11Q9Y5H2 935 aa14.87□□□□□ -0.03
CLN3-229ENST00000567963 HCFC1P51610 2035 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 A0A1B0GVC2 190 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 CCDC189A1A4V9 331 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 HMX2A2RU54 273 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 OR14I1A6ND48 311 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 IGHG3P01860 377 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 P04436 131 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 CCL3P10147 92 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 CHRNB4P30926 498 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 TLX1P31314 330 aaPredicted RBP14.86□□□□□ -0.03
CLN3-229ENST00000567963 MAGEA5P43359 124 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 KRTAP10-9P60411 292 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 FOLH1Q04609 750 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 PMPCAQ10713 525 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 FOXO1Q12778 655 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 SETDB1Q15047 1291 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 ACAP2Q15057 778 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 PFKFB4Q16877 469 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 HYAL4Q2M3T9 481 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 MROH9Q5TGP6 573 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 C18orf63Q68DL7 685 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 MEX3BQ6ZN04 569 aaKnown RBP14.86□□□□□ -0.03
CLN3-229ENST00000567963 MYLK4Q86YV6 388 aaPredicted RBP14.86□□□□□ -0.03
CLN3-229ENST00000567963 C9orf40Q8IXQ3 194 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 FAM109AQ8N4B1 249 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 TMEM251Q8N6I4 163 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 CHTF18Q8WVB6 975 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 DMRT3Q9NQL9 472 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 PNPLA3Q9NST1 481 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 PHF11Q9UIL8 331 aa14.86□□□□□ -0.03
CLN3-229ENST00000567963 H0YIV9 168 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 HRKO00198 91 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 PROM1O43490 865 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 DYRK3O43781 588 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 KLK8O60259 260 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 GFAPP14136 432 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 IGFBP2P18065 325 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 CAPN3P20807 821 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 PTX3P26022 381 aaPredicted RBP14.85□□□□□ -0.03
CLN3-229ENST00000567963 DNASE1L1P49184 302 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 ALDH18A1P54886 795 aaKnown RBP14.85□□□□□ -0.03
CLN3-229ENST00000567963 HNRNPH2P55795 449 aaKnown RBP14.85□□□□□ -0.03
CLN3-229ENST00000567963 RPS13P62277 151 aaKnown RBP14.85□□□□□ -0.03
CLN3-229ENST00000567963 ETF1P62495 437 aaKnown RBP14.85□□□□□ -0.03
CLN3-229ENST00000567963 PLIN5Q00G26 463 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 TNFRSF17Q02223 184 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 TFF3Q07654 80 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 ZNF791Q3KP31 576 aaPredicted RBP14.85□□□□□ -0.03
CLN3-229ENST00000567963 ZNF572Q7Z3I7 529 aaPredicted RBP14.85□□□□□ -0.03
CLN3-229ENST00000567963 ST13P4Q8IZP2 240 aaPredicted RBP14.85□□□□□ -0.03
CLN3-229ENST00000567963 ART5Q96L15 291 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 153 ms