RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 NTMT1Q9BV86 223 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 MRPL46Q9H2W6 279 aaKnown RBP19.26■□□□□ 0.67
CLN3-219ENST00000565778 PCTPQ9UKL6 214 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 MAST4O15021 2626 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 OR6B1O95007 311 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 RHOXF2BP0C7M4 288 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 FAM58BPP0C7Q3 252 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 ABOP16442 354 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 BSGP35613 385 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 RFC3P40938 356 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 STT3AP46977 705 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 HK2P52789 917 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 GPR85P60893 370 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 TNFRSF17Q02223 184 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 TRMT10CQ7L0Y3 403 aaKnown RBP19.25■□□□□ 0.67
CLN3-219ENST00000565778 GPALPP1Q8IXQ4 340 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 OR8K3Q8NH51 312 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 ZNF721Q8TF20 911 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 CCDC120Q96HB5 630 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 RASL10BQ96S79 203 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 SERPINI1Q99574 410 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 RHOXF2Q9BQY4 288 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 DDX31Q9H8H2 851 aaKnown RBP19.25■□□□□ 0.67
CLN3-219ENST00000565778 WDR41Q9HAD4 459 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 SEMA4BQ9NPR2 832 aaPredicted RBP19.25■□□□□ 0.67
CLN3-219ENST00000565778 LYARQ9NX58 379 aaKnown RBP19.25■□□□□ 0.67
CLN3-219ENST00000565778 TINAGQ9UJW2 476 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 ZNF835Q9Y2P0 537 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 ASB4Q9Y574 426 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 NAV2Q8IVL1 2488 aa19.25■□□□□ 0.67
CLN3-219ENST00000565778 DOPEY1Q5JWR5 2465 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 GLOD5A6NK44 160 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 WASHC1A8K0Z3 465 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 TFECO14948 347 aaPredicted RBP19.24■□□□□ 0.67
CLN3-219ENST00000565778 PRKRAO75569 313 aaKnown RBP19.24■□□□□ 0.67
CLN3-219ENST00000565778 GBAP04062 536 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 ALOX15P16050 662 aaPredicted RBP19.24■□□□□ 0.67
CLN3-219ENST00000565778 SOX3P41225 446 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 IGLV3-21P80748 117 aaPredicted RBP19.24■□□□□ 0.67
CLN3-219ENST00000565778 HSF1Q00613 529 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 IFT88Q13099 833 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 FRG2Q64ET8 278 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 SP5Q6BEB4 398 aaPredicted RBP19.24■□□□□ 0.67
CLN3-219ENST00000565778 MRM1Q6IN84 353 aaKnown RBP19.24■□□□□ 0.67
CLN3-219ENST00000565778 MRGPRGQ86SM5 289 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 FRG2BQ96QU4 278 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 ZNF717Q9BY31 904 aaPredicted RBP19.24■□□□□ 0.67
CLN3-219ENST00000565778 ZBTB26Q9HCK0 441 aa19.24■□□□□ 0.67
CLN3-219ENST00000565778 A0A0A6YYD5 115 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 A0A1W2PR48 441 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 ZNHIT1O43257 154 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 TMPRSS11DO60235 418 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 GPR75O95800 540 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 ABHD2P08910 425 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 PLIN5Q00G26 463 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 ZNF750Q32MQ0 723 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 SGO1Q5FBB7 561 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 ADGRD1Q6QNK2 874 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 Q6ZPB1 254 aaPredicted RBP19.23■□□□□ 0.67
CLN3-219ENST00000565778 RPS27LQ71UM5 84 aaKnown RBP19.23■□□□□ 0.67
CLN3-219ENST00000565778 NUDT13Q86X67 352 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 PSD4Q8NDX1 1056 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 OR4F6Q8NGB9 312 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 C16orf52Q8NHV5 167 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 DOK4Q8TEW6 326 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 ITLN2Q8WWU7 325 aaPredicted RBP19.23■□□□□ 0.67
CLN3-219ENST00000565778 MTBPQ96DY7 904 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 ART5Q96L15 291 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 AHSPQ9NZD4 102 aa19.23■□□□□ 0.67
CLN3-219ENST00000565778 DIDO1Q9BTC0 2240 aaKnown RBP19.23■□□□□ 0.67
CLN3-219ENST00000565778 CROCCQ5TZA2 2017 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 PRSS44E7EML9 344 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 RIPK2O43353 540 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 HS6ST1O60243 411 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 OR10H2O60403 315 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 CDC40O60508 579 aaKnown RBP eCLIP19.22■□□□□ 0.67
CLN3-219ENST00000565778 TSPAN8P19075 237 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 CDH13P55290 713 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 OPN5Q6U736 354 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 TIFABQ6ZNK6 161 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 DGAT2L6Q6ZPD8 337 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 ST13P4Q8IZP2 240 aaPredicted RBP19.22■□□□□ 0.67
CLN3-219ENST00000565778 SLC34A3Q8N130 599 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 ZFP62Q8NB50 900 aaPredicted RBP19.22■□□□□ 0.67
CLN3-219ENST00000565778 ELOVL6Q9H5J4 265 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 PPT2Q9UMR5 302 aa19.22■□□□□ 0.67
CLN3-219ENST00000565778 MYO7BQ6PIF6 2116 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 IQANK1A0A1B0GTG1 560 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 A8MT66 165 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 PRRG2O14669 202 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 PDE9AO76083 593 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 OTCP00480 354 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 KLK1P06870 262 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 SBK3P0C264 359 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 FAM153BP0C7A2 387 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 NR2F6P10588 404 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 TAC1P20366 129 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 GCAP28676 217 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 PTGER1P34995 402 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 PLGLB1Q02325 96 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms