RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 MS4A12Q9NXJ0 267 aa9.55□□□□□ -0.88
CLK3-205ENST00000561673 ERVK-11Q9UQG0 969 aa9.55□□□□□ -0.88
CLK3-205ENST00000561673 MEMO1Q9Y316 297 aa9.55□□□□□ -0.88
CLK3-205ENST00000561673 ATG4BQ9Y4P1 393 aa9.55□□□□□ -0.88
CLK3-205ENST00000561673 KLF2Q9Y5W3 355 aaPredicted RBP9.55□□□□□ -0.88
CLK3-205ENST00000561673 TACC2O95359 2948 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 C3orf80F5H4A9 247 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 FOXE1O00358 373 aaPredicted RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 OR7A17O14581 309 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 TFECO14948 347 aaPredicted RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 HNRNPRO43390 633 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 HS6ST1O60243 411 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 ZNF354AO60765 605 aaPredicted RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 EEDO75530 441 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 PRKRAO75569 313 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 CLDN9O95484 217 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 TUBB4AP04350 444 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 RBP1P09455 135 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 PRF1P14222 555 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 ABOP16442 354 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 HTR1EP28566 365 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 TLX1P31314 330 aaPredicted RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 BSGP35613 385 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 SOX3P41225 446 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 STT3AP46977 705 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 PIK3CGP48736 1102 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 NEK2P51955 445 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 ARFIP1P53367 373 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 HNRNPH2P55795 449 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 IGLV3-21P80748 117 aaPredicted RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 FOLH1Q04609 750 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 ZNF630Q2M218 657 aaPredicted RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 ZNF750Q32MQ0 723 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 GLE1Q53GS7 698 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 CMPK2Q5EBM0 449 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 MRM1Q6IN84 353 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 XKRXQ6PP77 449 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 BNC2Q6ZN30 1099 aaPredicted RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 DGAT2L6Q6ZPD8 337 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 LURAP1LQ8IV03 231 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 GPALPP1Q8IXQ4 340 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 ZCCHC7Q8N3Z6 543 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 PSD4Q8NDX1 1056 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 C7orf57Q8NEG2 295 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 MNS1Q8NEH6 495 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 OR52B6Q8NGF0 335 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 OR52N2Q8NGI0 321 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 UHMK1Q8TAS1 419 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 WDR20Q8TBZ3 569 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 AGAP11Q8TF27 550 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 DCAKDQ8WVC6 231 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 REPS1Q96D71 796 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 MTFMTQ96DP5 389 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 RBM18Q96H35 190 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 SENP5Q96HI0 755 aaPredicted RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 DGAT2Q96PD7 388 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 PAFAH2Q99487 392 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 NOL11Q9H8H0 719 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 DDX31Q9H8H2 851 aaKnown RBP9.54□□□□□ -0.88
CLK3-205ENST00000561673 PSD3Q9NYI0 1048 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 ASB4Q9Y574 426 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 IKBKGQ9Y6K9 419 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 APCP25054 2843 aa9.54□□□□□ -0.88
CLK3-205ENST00000561673 MYO7BQ6PIF6 2116 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 A0A0A6YYD5 115 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 A0A0G2JMM0 328 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 A0A1B0GTH9 108 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 A0A1W2PPB8 328 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 A0A1W2PR48 441 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 A0A1W2PRS3 328 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 PINLYPA6NC86 204 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 GLOD5A6NK44 160 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 KIR3DP1A8MWS1 328 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 POC1B-GALNT4F8VUJ3 575 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 HRKO00198 91 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 PRRG2O14669 202 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 ADAM10O14672 748 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 TMPRSS11DO60235 418 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 CDC40O60508 579 aaKnown RBP eCLIP9.53□□□□□ -0.88
CLK3-205ENST00000561673 KRT38O76015 456 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 PDE9AO76083 593 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 GPR75O95800 540 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 IGKV3-11P04433 115 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 FAM58BPP0C7Q3 252 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 CTAGE8P0CG41 777 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 COX7A2P14406 83 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 AGAP20933 346 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 SERPINB9P50453 376 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 NR0B1P51843 470 aaKnown RBP9.53□□□□□ -0.88
CLK3-205ENST00000561673 CCNG1P51959 295 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 SMSP52788 366 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 PHEXP78562 749 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 TNFRSF17Q02223 184 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 BIKQ13323 160 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 CUL3Q13618 768 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 CDSNQ15517 529 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 PIGGQ5H8A4 983 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 C3P1Q6ZMU1 363 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 NCCRP1Q6ZVX7 275 aaPredicted RBP9.53□□□□□ -0.88
CLK3-205ENST00000561673 TICAM1Q8IUC6 712 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms