RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 TRGV5A0A0B4J1U4 118 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 LRRC3CA6NJW4 275 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 CLGNO14967 610 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 LDB3O75112 727 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 STK16O75716 305 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 RFPL3SP0C7P2 107 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 FOSL1P15407 271 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 HIST1H1TP22492 207 aaPredicted RBP15.14■□□□□ 0.01
CLN3-208ENST00000561505 CEACAM8P31997 349 aaPredicted RBP15.14■□□□□ 0.01
CLN3-208ENST00000561505 STT3AP46977 705 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 POU4F1Q01851 419 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 DAZAP2Q15038 168 aaPredicted RBP15.14■□□□□ 0.01
CLN3-208ENST00000561505 TMEM35AQ53FP2 167 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 SLC22A10Q63ZE4 541 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 FRA10AC1Q70Z53 315 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 CYS1Q717R9 158 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 C9orf40Q8IXQ3 194 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 ULK2Q8IYT8 1036 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 SLC35F6Q8N357 371 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 BBOF1Q8ND07 529 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 SH3GL2Q99962 352 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 CNPPD1Q9BV87 410 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 LIME1Q9H400 295 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 ZFP64Q9NPA5 681 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 CNIH4Q9P003 139 aa15.14■□□□□ 0.01
CLN3-208ENST00000561505 RPH3AQ9Y2J0 694 aaPredicted RBP15.14■□□□□ 0.01
CLN3-208ENST00000561505 CHCHD2Q9Y6H1 151 aaPredicted RBP15.14■□□□□ 0.01
CLN3-208ENST00000561505 MYOCOSA0A1B0GUC4 107 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 ATP6AP2A0A1C7CYW4 349 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 ANKRD33BA6NCL7 494 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 PROM1O43490 865 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 FGF17O60258 216 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 ATP6AP2O75787 350 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 FAM155BO75949 473 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 SEC31AO94979 1220 aaKnown RBP15.13■□□□□ 0.01
CLN3-208ENST00000561505 KLK2P20151 261 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 PIGAP37287 484 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 ARFIP1P53367 373 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 ARL4CP56559 192 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 ASPHQ12797 758 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 PDK4Q16654 411 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 FBXW8Q8N3Y1 598 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 NEIL3Q8TAT5 605 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 SPACA9Q96E40 222 aaPredicted RBP15.13■□□□□ 0.01
CLN3-208ENST00000561505 FBXL20Q96IG2 436 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 ALPK1Q96QP1 1244 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 POLDIP3Q9BY77 421 aaKnown RBP15.13■□□□□ 0.01
CLN3-208ENST00000561505 COPS7BQ9H9Q2 264 aaPredicted RBP15.13■□□□□ 0.01
CLN3-208ENST00000561505 SMYD2Q9NRG4 433 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 COPS7AQ9UBW8 275 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 TSC22D4Q9Y3Q8 395 aa15.13■□□□□ 0.01
CLN3-208ENST00000561505 HSPB2A8KAH6 182 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 EPPINO95925 133 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 C1QAP02745 245 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 FBXO45P0C2W1 286 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 CD1DP15813 335 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 TNNI3P19429 210 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 KIR2DL3P43628 341 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 HSPA7P48741 367 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 ATP6V0D1P61421 351 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 FASTKD3Q14CZ7 662 aaKnown RBP15.12■□□□□ 0.01
CLN3-208ENST00000561505 ZKSCAN8Q15776 578 aaPredicted RBP15.12■□□□□ 0.01
CLN3-208ENST00000561505 HSPB2Q16082 182 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 SPRED3Q2MJR0 410 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 PAGE2BQ5JRK9 111 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 DEPDC1Q5TB30 811 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 DGAT2L6Q6ZPD8 337 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 GPSM1Q86YR5 675 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 RELL2Q8NC24 303 aaPredicted RBP15.12■□□□□ 0.01
CLN3-208ENST00000561505 FBXO36Q8NEA4 188 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 FAM222BQ8WU58 562 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 ESAMQ96AP7 390 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 CD244Q9BZW8 370 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 MS4A12Q9NXJ0 267 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 CRIM1Q9NZV1 1036 aa15.12■□□□□ 0.01
CLN3-208ENST00000561505 CNOT11Q9UKZ1 510 aaKnown RBP15.12■□□□□ 0.01
CLN3-208ENST00000561505 MTO1Q9Y2Z2 717 aaKnown RBP15.12■□□□□ 0.01
CLN3-208ENST00000561505 ARHGAP21Q5T5U3 1957 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 FLNAP21333 2647 aaKnown RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 NCF1BA6NI72 391 aaPredicted RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 NCF1CA8MVU1 366 aaPredicted RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 AHRRA9YTQ3 701 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 RTCAO00442 366 aaKnown RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 DIAPH2O60879 1101 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 TRIM3O75382 744 aaPredicted RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 NCF1P14598 390 aaPredicted RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 SERPINB1P30740 379 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 GALNSP34059 522 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 TIMP3P35625 211 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 CHIT1Q13231 466 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 OR4D1Q15615 310 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 CHSY3Q70JA7 882 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 CAMKMTQ7Z624 323 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 ZZZ3Q8IYH5 903 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 ZNF441Q8N8Z8 693 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 OR7G3Q8NG95 312 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 SLC22A8Q8TCC7 542 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 TANKQ92844 425 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 UBE2E3Q969T4 207 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 ART5Q96L15 291 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms