RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 HNRNPCL1O60812 293 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 KCNJ13O60928 360 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TNFSF15O95150 251 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 LDLRP01130 860 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 IFNA14P01570 189 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 AHCYP23526 432 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 FASP25445 335 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 HNRNPH1P31943 449 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 GSK3BP49841 420 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 INHBCP55103 352 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CDH12P55289 794 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TAS2R41P59536 307 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 NAA20P61599 178 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 BTG2P78543 158 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 COLEC12Q5KU26 742 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 INTS11Q5TA45 600 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 KANK2Q63ZY3 851 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 LPCAT4Q643R3 524 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PLEKHM3Q6ZWE6 761 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 SLC29A4Q7RTT9 530 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 MAVSQ7Z434 540 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 B3GNT8Q7Z7M8 397 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 ZFAND4Q86XD8 727 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 MEX3DQ86XN8 651 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM151BQ8IW70 566 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PARP8Q8N3A8 854 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 SLC25A45Q8N413 288 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CHCHD4Q8N4Q1 142 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 GALNT6Q8NCL4 622 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 NUP43Q8NFH3 380 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TNIP2Q8NFZ5 429 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 ACTRT2Q8TDY3 377 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TADA1Q96BN2 335 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 EFHD2Q96C19 240 aaPredicted RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PDLIM5Q96HC4 596 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 LRRN3Q9H3W5 708 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 YY1AP1Q9H869 796 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 SLC35C2Q9NQQ7 365 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 AIG1Q9NVV5 245 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TMA7Q9Y2S6 64 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 AP4S1Q9Y587 144 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PCDHGA2Q9Y5H1 932 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 DIDO1Q9BTC0 2240 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 C15orf38-AP3S2A0A0A6YYH1 394 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 A0A1W2PP18 115 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 LNP1A1A4G5 178 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 KLHL33A6NCF5 533 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 FAM47E-STBD1D6RA91 191 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PLPP1O14494 284 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PGM3O95394 542 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 AIFM1O95831 613 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 C1QAP02745 245 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 ALBP02768 609 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 SAGP10523 405 aaPredicted RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PIM1P11309 404 aaPredicted RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 FOLR1P15328 257 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CD1EP15812 388 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 MATN1P21941 496 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CCKBRP32239 447 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 RPL4P36578 427 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CAPZBP47756 277 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 SLC18A1P54219 525 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 RPS18P62269 152 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 BNIP1Q12981 228 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 BIKQ13323 160 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 HERC3Q15034 1050 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TRIP6Q15654 476 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PERM1Q5SV97 790 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CWF19L1Q69YN2 538 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 ABRAXAS1Q6UWZ7 409 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 IZUMO2Q6UXV1 221 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 C6orf120Q7Z4R8 191 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 ARPINQ7Z6K5 226 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 SIRT6Q8N6T7 355 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 OR56A3Q8NH54 315 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TSLPQ969D9 159 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 GTPBP3Q969Y2 492 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 COX14Q96I36 57 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 REXO5Q96IC2 774 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 RTKNQ9BST9 563 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 DENND2DQ9H6A0 471 aaPredicted RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 METTL7AQ9H8H3 244 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 REEP1Q9H902 201 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 C1GALT1Q9NS00 363 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 SLC7A8Q9UHI5 535 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 MRPS2Q9Y399 296 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 WDR45Q9Y484 360 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 EIF3FO00303 357 aaPredicted RBP5.15□□□□□ -1.58
VPS13C-209ENST00000560637 CXCR6O00574 342 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 CSO75390 466 aaKnown RBP5.15□□□□□ -1.58
VPS13C-209ENST00000560637 SERPINB7O75635 380 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 SLC25A12O75746 678 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 RSL1D1O76021 490 aaKnown RBP5.15□□□□□ -1.58
VPS13C-209ENST00000560637 PRKD3O94806 890 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 ALOX5P09917 674 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 NUDT7P0C024 238 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 ZCCHC18P0CG32 403 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 CKMT2P17540 419 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 GM2AP17900 193 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 CD22P20273 847 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms