RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 C18orf63Q68DL7 685 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 SLC48A1Q6P1K1 146 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 MAVSQ7Z434 540 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 SPATA21Q7Z572 469 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 PRSS58Q8IYP2 241 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 MIER2Q8N344 545 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 FAM47BQ8NA70 645 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 VPS37AQ8NEZ2 397 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 RFWD2Q8NHY2 731 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 ZFP28Q8NHY6 868 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 DNAJB14Q8TBM8 379 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 THAP4Q8WY91 577 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 PPCDCQ96CD2 204 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 THOC1Q96FV9 657 aaKnown RBP8.68□□□□□ -1.02
LDLR-210ENST00000559340 NAF1Q96HR8 494 aaKnown RBP8.68□□□□□ -1.02
LDLR-210ENST00000559340 TSSK3Q96PN8 268 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 OR52B2Q96RD2 323 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 BBS4Q96RK4 519 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 SPSB2Q99619 263 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 TMEM120AQ9BXJ8 343 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 ALOXE3Q9BYJ1 711 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 VN1R1Q9GZP7 353 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 ACTL8Q9H568 366 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 LANCL2Q9NS86 450 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 AIG1Q9NVV5 245 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 TAS2R7Q9NYW3 318 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 ZIM2Q9NZV7 527 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 SH3BP4Q9P0V3 963 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 ATP6V1HQ9UI12 483 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 UTS2RQ9UKP6 389 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 E9PBE3 544 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 TAF4O00268 1085 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 TERTO14746 1132 aaKnown RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 AKAP10O43572 662 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 OR10H2O60403 315 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 KLHL41O60662 606 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 SHOX2O60902 331 aaPredicted RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 DNAJB6O75190 326 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 ERAL1O75616 437 aaKnown RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 CDC123O75794 336 aaPredicted RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 SLITRK5O94991 958 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 CAPNS1P04632 268 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 IFNA16P05015 189 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 FURINP09958 794 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 SLC35E2P0CK97 266 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 ICAM2P13598 275 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 PORP16435 677 aaPredicted RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 NCF2P19878 526 aaPredicted RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 DRD4P21917 467 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 ADSLP30566 484 aaPredicted RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 NTSP30990 170 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 OTX2P32243 289 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 GALNSP34059 522 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 MPIP34949 423 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 MRPL19P49406 292 aaKnown RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 XKP51811 444 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 RRADP55042 308 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 OR4D2P58180 307 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 C21orf58P58505 322 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 SNRPNP63162 240 aaKnown RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 PLIN5Q00G26 463 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 RHAGQ02094 409 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 LRRC74AQ0VAA2 488 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 SQLEQ14534 574 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 UGT8Q16880 541 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 ANXA8L1Q5VT79 327 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 FAM219BQ5XKK7 198 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 TMEM205Q6UW68 189 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 CCDC81Q6ZN84 652 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 CPEB2Q7Z5Q1 589 aaKnown RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 LAPTM4BQ86VI4 370 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 SCUBE1Q8IWY4 988 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 ST13P4Q8IZP2 240 aaPredicted RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.67□□□□□ -1.02
LDLR-210ENST00000559340 DAZLQ92904 295 aaKnown RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 KLHL29Q96CT2 875 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 ART5Q96L15 291 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 FER1L6-AS2Q96M78 137 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 CATSPER2Q96P56 530 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 DCBLD2Q96PD2 775 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 DGAT2Q96PD7 388 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 CCT8L2Q96SF2 557 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 CSF3RQ99062 836 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 LPAR4Q99677 370 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 EBF4Q9BQW3 602 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 RBCK1Q9BYM8 510 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 BRINP2Q9C0B6 783 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 FAM107BQ9H098 131 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 KCNK13Q9HB14 408 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 ADAP2Q9NPF8 381 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 SLC35C2Q9NQQ7 365 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 TEX10Q9NXF1 929 aaPredicted RBP8.67□□□□□ -1.02
LDLR-210ENST00000559340 GIMAP2Q9UG22 337 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 IL17BQ9UHF5 180 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 BAIAP2L1Q9UHR4 511 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 PCDHGB4Q9UN71 923 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 GPR45Q9Y5Y3 372 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 BAHCC1Q9P281 2608 aa8.67□□□□□ -1.02
LDLR-210ENST00000559340 PKD1L2Q7Z442 2459 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 LOC102723996A0A087X1L8 192 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms