RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 P3H4Q92791 437 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 MCHR2Q969V1 340 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 TMEM45BQ96B21 275 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 RAB3CQ96E17 227 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 MAGED4Q96JG8 741 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 RPGRIP1Q96KN7 1286 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 LURAP1Q96LR2 239 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 C16orf45Q96MC5 204 aaPredicted RBP1.4□□□□□ -2.19
USP3-209ENST00000558925 DEFB118Q96PH6 123 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 ZNF300Q96RE9 604 aaPredicted RBP1.4□□□□□ -2.19
USP3-209ENST00000558925 F2RL3Q96RI0 385 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 RAB40CQ96S21 281 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 KCNK16Q96T55 309 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 IL12RB2Q99665 862 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 LITAFQ99732 161 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 OVOL2Q9BRP0 275 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 PAPOLGQ9BWT3 736 aaKnown RBP1.4□□□□□ -2.19
USP3-209ENST00000558925 CLEC7AQ9BXN2 247 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 DGCR6LQ9BY27 220 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 NLNQ9BYT8 704 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 RAB17Q9H0T7 212 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 TRPV6Q9H1D0 765 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 SLC26A1Q9H2B4 701 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 GANQ9H2C0 597 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 TMEM231Q9H6L2 316 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 ZNF696Q9H7X3 374 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 ROPN1Q9HAT0 212 aaPredicted RBP1.4□□□□□ -2.19
USP3-209ENST00000558925 PLEKHA3Q9HB20 300 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 IL1RAPQ9NPH3 570 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 SCRT2Q9NQ03 307 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 YAE1D1Q9NRH1 226 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 ACOXLQ9NUZ1 547 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 MED17Q9NVC6 651 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 ATAD3AQ9NVI7 634 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 CNOT2Q9NZN8 540 aaKnown RBP1.4□□□□□ -2.19
USP3-209ENST00000558925 KLHL8Q9P2G9 620 aaPredicted RBP1.4□□□□□ -2.19
USP3-209ENST00000558925 BAIAP2L1Q9UHR4 511 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 SH3BGRL2Q9UJC5 107 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 TCF19Q9Y242 345 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 RNF115Q9Y4L5 304 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 SELENOKQ9Y6D0 94 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 CSNK1G3Q9Y6M4 447 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 ABCC4O15439 1325 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 ZMYM6O95789 1325 aa1.4□□□□□ -2.19
USP3-209ENST00000558925 A0A0U1RQV5 110 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 MEIOCA2RUB1 952 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 ZNF724A8MTY0 619 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 H3BMH7 237 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 SH2D1BO14796 132 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 CHADO15335 359 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 NME2P1O60361 137 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 SCGB2A1O75556 95 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 ZFAND5O76080 213 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 OR6A2O95222 327 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 AK1P00568 194 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 HPRP00739 348 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 HEXBP07686 556 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 SFTPBP07988 381 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 GSTA2P09210 222 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 ZSCAN5DPP0CG00 497 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 CD1DP15813 335 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 AOC1P19801 751 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 PAICSP22234 425 aaKnown RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 PRKACGP22612 351 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 IL4RP24394 825 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 CYP2F1P24903 491 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 EDNRAP25101 427 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 DNAJB1P25685 340 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 GIFP27352 417 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 PDHA2P29803 388 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 HLA-FP30511 346 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 STIP1P31948 543 aaKnown RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 GPR183P32249 361 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 TRPC1P48995 793 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 NPY2RP49146 381 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 FHITP49789 147 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 CCR4P51679 360 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 RPS4XP62701 263 aaKnown RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 RPS27AP62979 156 aaKnown RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 MYBPC1Q00872 1141 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 DHODHQ02127 395 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 PRKCEQ02156 737 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 GABPB1Q06547 395 aaPredicted RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 RBBP4Q09028 425 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 HSPA14Q0VDF9 509 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 KLF5Q13887 457 aaPredicted RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 BTG3Q14201 252 aaPredicted RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 SLC17A1Q14916 467 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 P2RY14Q15391 338 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 TEAD2Q15562 447 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 CLPPQ16740 277 aaPredicted RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 KNOP1Q1ED39 458 aaKnown RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 USH1GQ495M9 461 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 MPPE1Q53F39 396 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 TCHHL1Q5QJ38 904 aaPredicted RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 FIP1L1Q6UN15 594 aaKnown RBP1.39□□□□□ -2.19
USP3-209ENST00000558925 ARMCX2Q7L311 632 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 MCM10Q7L590 875 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 CHMP1BQ7LBR1 199 aa1.39□□□□□ -2.19
USP3-209ENST00000558925 SYVN1Q86TM6 617 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 171.2 ms