RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ETV1P50549 477 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 RBBP4Q09028 425 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 RPA4Q13156 261 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 SEC23BQ15437 767 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 TEAD4Q15561 434 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 KCNA10Q16322 511 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 MPPE1Q53F39 396 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 RETSATQ6NUM9 610 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 ANKRD54Q6NXT1 300 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 CHMP1BQ7LBR1 199 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 IQCHQ86VS3 1027 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 TMC8Q8IU68 726 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 PHC2Q8IXK0 858 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 GEMIN6Q8WXD5 167 aaKnown RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 SMG7Q92540 1137 aaKnown RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 ARSGQ96EG1 525 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 FUBP3Q96I24 572 aaKnown RBP eCLIP10.81□□□□□ -0.68
LDLR-208ENST00000558518 MND1Q9BWT6 205 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 PLA2G10O15496 165 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 UGT2B17O75795 530 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 MANFP55145 182 aaKnown RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 SLBPQ14493 270 aaKnown RBP eCLIP10.81□□□□□ -0.68
LDLR-208ENST00000558518 CRB2Q5IJ48 1285 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 CRTC1Q6UUV9 634 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 TRMT11Q7Z4G4 463 aaKnown RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 OR7G3Q8NG95 312 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 C9orf43Q8TAL5 461 aaPredicted RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 ZNF431Q8TF32 576 aaPredicted RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 CLP1Q92989 425 aaKnown RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 MED28Q9H204 178 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 MIXL1Q9H2W2 232 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 EQTNQ9NQ60 294 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 PTGFRNQ9P2B2 879 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 ANGPT4Q9Y264 503 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 HTTP42858 3142 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 SLC30A4O14863 429 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 LYRM1O43325 122 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 PRKYO43930 277 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 SCN2BO60939 215 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 JUPP14923 745 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 PDHA2P29803 388 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 ABATP80404 500 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 CHRNEQ04844 493 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 FAM110CQ1W6H9 321 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 YIF1BQ5BJH7 314 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 SMARCD3Q6STE5 483 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 WASH2PQ6VEQ5 465 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 ZNF467Q7Z7K2 595 aaPredicted RBP10.8□□□□□ -0.68
LDLR-208ENST00000558518 DNAJB8Q8NHS0 232 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 QRFPRQ96P65 431 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 IL17FQ96PD4 163 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 ABCG4Q9H172 646 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 MGAT4AQ9UM21 535 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 MAPRE3Q9UPY8 281 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 GSTK1Q9Y2Q3 226 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 VCANP13611 3396 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 H3BNC9 293 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 SCG5P05408 212 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 IDSP22304 550 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 PTGS2P35354 604 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 CRYBB2P43320 205 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 B4GALNT1Q00973 533 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 ANXA8L1Q5VT79 327 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 UNC5DQ6UXZ4 953 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 LRRC70Q7Z2Q7 622 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 UXS1Q8NBZ7 420 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 OR5D16Q8NGK9 328 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 DOK4Q8TEW6 326 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 NEIL2Q969S2 332 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 MS4A4AQ96JQ5 239 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 WFDC6Q9BQY6 131 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 NLNQ9BYT8 704 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 QRSL1Q9H0R6 528 aaKnown RBP10.8□□□□□ -0.68
LDLR-208ENST00000558518 GPBP1L1Q9HC44 474 aaPredicted RBP10.8□□□□□ -0.68
LDLR-208ENST00000558518 C12orf4Q9NQ89 552 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 ZDHHC3Q9NYG2 299 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 ZNF282Q9UDV7 671 aaPredicted RBP10.8□□□□□ -0.68
LDLR-208ENST00000558518 PCDHB7Q9Y5E2 793 aa10.8□□□□□ -0.68
LDLR-208ENST00000558518 DVL2O14641 736 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 OAZ2O95190 189 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 HRGP04196 525 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 IL3P08700 152 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ZNF250P15622 560 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ALAS2P22557 587 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ERP29P30040 261 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 SRP9P49458 86 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 ZNF81P51508 661 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 LIM2P55344 173 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 DCDC1P59894 354 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 PFN3P60673 137 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 COX10Q12887 443 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 MAB21L1Q13394 359 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 VEZF1Q14119 521 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 FUT10Q6P4F1 479 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 CCDC149Q6ZUS6 474 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 COMMD6Q7Z4G1 85 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 RTN4RL1Q86UN2 441 aaPredicted RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 SLC16A10Q8TF71 515 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ZBED6CLQ96FA7 236 aaPredicted RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 SIPA1Q96FS4 1042 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms