RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 FAM173AQ9BQD7 235 aa13.56□□□□□ -0.24
SHMT2-235ENST00000557740 SORBS1Q9BX66 1292 aaKnown RBP13.56□□□□□ -0.24
SHMT2-235ENST00000557740 RPF2Q9H7B2 306 aaKnown RBP13.56□□□□□ -0.24
SHMT2-235ENST00000557740 DMRT3Q9NQL9 472 aa13.56□□□□□ -0.24
SHMT2-235ENST00000557740 SACM1LQ9NTJ5 587 aa13.56□□□□□ -0.24
SHMT2-235ENST00000557740 PCDHGA11Q9Y5H2 935 aa13.56□□□□□ -0.24
SHMT2-235ENST00000557740 CACNA1CQ13936 2221 aa13.56□□□□□ -0.24
SHMT2-235ENST00000557740 ESYT3A0FGR9 886 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 PINLYPA6NC86 204 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 ETHE1O95571 254 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 P04436 131 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 C2P06681 752 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 MTHFD2P13995 350 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 BUD31P41223 144 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-235ENST00000557740 KIR3DL1P43629 444 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 SERPINB8P50452 374 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 ALDH18A1P54886 795 aaKnown RBP13.55□□□□□ -0.24
SHMT2-235ENST00000557740 IGLV3-21P80748 117 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-235ENST00000557740 TNFRSF17Q02223 184 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 CKAP4Q07065 602 aaKnown RBP13.55□□□□□ -0.24
SHMT2-235ENST00000557740 SLAMF1Q13291 335 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 ACAP2Q15057 778 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 PFKFB4Q16877 469 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 LIPJQ5W064 366 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 GPR180Q86V85 440 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 OR4N5Q8IXE1 308 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 ZCCHC7Q8N3Z6 543 aaKnown RBP13.55□□□□□ -0.24
SHMT2-235ENST00000557740 RNF175Q8N4F7 328 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 SLC22A8Q8TCC7 542 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 ASB5Q8WWX0 329 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 TANKQ92844 425 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 SPOCK3Q9BQ16 436 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 ZDHHC11Q9H8X9 412 aa13.55□□□□□ -0.24
SHMT2-235ENST00000557740 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.55□□□□□ -0.246e-6■■□□□ 12.1
SHMT2-235ENST00000557740 LYARQ9NX58 379 aaKnown RBP13.55□□□□□ -0.24
SHMT2-235ENST00000557740 FBN2P35556 2912 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 CCDC168Q8NDH2 2452 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 A0A096LPK6 155 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 NPIPA2E9PIF3 369 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 NPIPA3F8WFD2 350 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 PLPP1O14494 284 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 OR10H2O60403 315 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 ALOX15P16050 662 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-235ENST00000557740 CNR1P21554 472 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 CHRNB4P30926 498 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 PHBP35232 272 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 ARL1P40616 181 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-235ENST00000557740 PIK3CGP48736 1102 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 RPS13P62277 151 aaKnown RBP13.54□□□□□ -0.24
SHMT2-235ENST00000557740 SLC7A5Q01650 507 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 GUCY2DQ02846 1103 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 FOLH1Q04609 750 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 ASPHQ12797 758 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 BIKQ13323 160 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 MPEG1Q2M385 716 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 MEX3BQ6ZN04 569 aaKnown RBP13.54□□□□□ -0.24
SHMT2-235ENST00000557740 ZNF572Q7Z3I7 529 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-235ENST00000557740 C9orf40Q8IXQ3 194 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 ZNF295-AS1Q8N0V1 137 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 FAM109AQ8N4B1 249 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 MARVELD2Q8N4S9 558 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 OR5M3Q8NGP4 307 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 NUBPLQ8TB37 319 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 RND1Q92730 232 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 SENP5Q96HI0 755 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-235ENST00000557740 SMC6Q96SB8 1091 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 PELOQ9BRX2 385 aaKnown RBP13.54□□□□□ -0.24
SHMT2-235ENST00000557740 CNPPD1Q9BV87 410 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 IL1RL2Q9HB29 575 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 CPSF2Q9P2I0 782 aaKnown RBP13.54□□□□□ -0.24
SHMT2-235ENST00000557740 TSC22D4Q9Y3Q8 395 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 ATG4BQ9Y4P1 393 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 TNPO3Q9Y5L0 923 aaKnown RBP13.54□□□□□ -0.24
SHMT2-235ENST00000557740 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.54□□□□□ -0.248e-7■■□□□ 12.4
SHMT2-235ENST00000557740 CSMD1Q96PZ7 3565 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 GTF3C1Q12789 2109 aa13.54□□□□□ -0.24
SHMT2-235ENST00000557740 FIGNL2A6NMB9 653 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 FAM90A27PA6NNH2 459 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 H0YIV9 168 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 BCKDKO14874 412 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 UGDHO60701 494 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 GLSO94925 669 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-235ENST00000557740 KLHL2O95198 593 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 CCL3P10147 92 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 NR2F6P10588 404 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 PTX3P26022 381 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-235ENST00000557740 TYK2P29597 1187 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 MAGEA5P43359 124 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 DNASE1L1P49184 302 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 ARFIP1P53367 373 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 HNRNPH2P55795 449 aaKnown RBP13.53□□□□□ -0.24
SHMT2-235ENST00000557740 GTF2H2Q13888 395 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 PCBP2Q15366 365 aaKnown RBP eCLIP13.53□□□□□ -0.24
SHMT2-235ENST00000557740 CPSF6Q16630 551 aaKnown RBP eCLIP13.53□□□□□ -0.24
SHMT2-235ENST00000557740 PIGGQ5H8A4 983 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 C18orf63Q68DL7 685 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 GTF2H2CQ6P1K8 395 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 CYP20A1Q6UW02 462 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 ACAD11Q709F0 780 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 GOLGA7Q7Z5G4 137 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms