RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 BIKQ13323 160 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 ELAVL1Q15717 326 aaKnown RBP12.71□□□□□ -0.37
SHMT2-228ENST00000557302 CRB2Q5IJ48 1285 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 NDUFAF5Q5TEU4 345 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 GALNT18Q6P9A2 607 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 ISLR2Q6UXK2 745 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 RNF165Q6ZSG1 346 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 PTRH1Q86Y79 214 aaKnown RBP12.71□□□□□ -0.37
SHMT2-228ENST00000557302 OR4N5Q8IXE1 308 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 TMEM132CQ8N3T6 1108 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 SIRT6Q8N6T7 355 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 AMER2Q8N7J2 671 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 AGR3Q8TD06 166 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 TWIST2Q8WVJ9 160 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 PSMF1Q92530 271 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 SH3GL2Q99962 352 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 FAIM2Q9BWQ8 316 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 KCNK13Q9HB14 408 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 PTGFRNQ9P2B2 879 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 VTI1BQ9UEU0 232 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 DNAJC15Q9Y5T4 150 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 CLCA3PQ9Y6N3 262 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 A8MUI8 341 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 DPM1O60762 260 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 LYPLA1O75608 230 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-228ENST00000557302 C1QL1O75973 258 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 SNUPNO95149 360 aaKnown RBP12.7□□□□□ -0.38
SHMT2-228ENST00000557302 GPR75O95800 540 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 COX7A2P14406 83 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 TNNI3P19429 210 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 SOX11P35716 441 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 TAS2R50P59544 299 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 RAE1P78406 368 aaKnown RBP12.7□□□□□ -0.38
SHMT2-228ENST00000557302 PLIN5Q00G26 463 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 KLRB1Q12918 225 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 MFAP5Q13361 173 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 UGT3A2Q3SY77 523 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 TTMPQ5BVD1 217 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 CES4AQ5XG92 561 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 ATG14Q6ZNE5 492 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 DDIASQ8IXT1 998 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 ZNF843Q8N446 348 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 TEX19Q8NA77 164 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 NFAM1Q8NET5 270 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-228ENST00000557302 B3GNT7Q8NFL0 401 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 OR14A16Q8NHC5 309 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 DAZLQ92904 295 aaKnown RBP12.7□□□□□ -0.38
SHMT2-228ENST00000557302 TM4SF18Q96CE8 201 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 METTL2AQ96IZ6 378 aaKnown RBP12.7□□□□□ -0.38
SHMT2-228ENST00000557302 DGAT2Q96PD7 388 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 PELOQ9BRX2 385 aaKnown RBP12.7□□□□□ -0.38
SHMT2-228ENST00000557302 TUBB1Q9H4B7 451 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 EPS8L2Q9H6S3 715 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 SIRT5Q9NXA8 310 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 TEKT2Q9UIF3 430 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 ZDHHC2Q9UIJ5 367 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 PCDHA9Q9Y5H5 950 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 PTGDR2Q9Y5Y4 395 aa12.7□□□□□ -0.38
SHMT2-228ENST00000557302 HELZ2Q9BYK8 2649 aaKnown RBP12.69□□□□□ -0.38
SHMT2-228ENST00000557302 C1orf226A1L170 272 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 WASHC1A8K0Z3 465 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 C17orf105B2RV13 164 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 NPIPB8E9PQR5 432 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 PIP5K1BO14986 540 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 PGRMC2O15173 223 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 ITM2AO43736 263 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 OR10H2O60403 315 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 SEC22BO75396 215 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 IL3P08700 152 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 ANXA4P09525 319 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-228ENST00000557302 LINC00032P0C843 101 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 ALOX15P16050 662 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-228ENST00000557302 PRPH2P23942 346 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 PIK3R1P27986 724 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 STT3AP46977 705 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 SLC1A6P48664 564 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 STX3Q13277 289 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 NR6A1Q15406 480 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 IGFL3Q6UXB1 125 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 LINC00696Q6ZRV3 163 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 ST13P4Q8IZP2 240 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-228ENST00000557302 ZADH2Q8N4Q0 377 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 FAM76AQ8TAV0 307 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 DNAJB14Q8TBM8 379 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 ELP5Q8TE02 316 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 PTPMT1Q8WUK0 201 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-228ENST00000557302 UCN3Q969E3 161 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 C11orf24Q96F05 449 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-228ENST00000557302 VMP1Q96GC9 406 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 RBM18Q96H35 190 aaKnown RBP12.69□□□□□ -0.38
SHMT2-228ENST00000557302 LMF1Q96S06 567 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 EBPLQ9BY08 206 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 ILKAPQ9H0C8 392 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-228ENST00000557302 ACBD3Q9H3P7 528 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 LRTM1Q9HBL6 345 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 PFDN4Q9NQP4 134 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 C1orf109Q9NX04 203 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 PPIEQ9UNP9 301 aaKnown RBP12.69□□□□□ -0.38
SHMT2-228ENST00000557302 DLGAP4Q9Y2H0 992 aa12.69□□□□□ -0.38
SHMT2-228ENST00000557302 RAP2CQ9Y3L5 183 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms