RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 GMFBP60983 142 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ARF5P84085 180 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 MC1RQ01726 317 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 KCNC4Q03721 635 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 SPHARQ15513 63 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PRSS36Q5K4E3 855 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 CATSPEREQ5SY80 951 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PIP5KL1Q5T9C9 394 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 B3GLCTQ6Y288 498 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 KIF18BQ86Y91 864 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ZNF280BQ86YH2 543 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 TICAM1Q8IUC6 712 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ARMC10Q8N2F6 343 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 NLGN2Q8NFZ4 835 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 C16orf78Q8WTQ4 265 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 UPF1Q92900 1129 aaKnown RBP eCLIP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PMEPA1Q969W9 287 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 RERGQ96A58 199 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PGAP3Q96FM1 320 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ZNF419Q96HQ0 510 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ATOH8Q96SQ7 321 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 CSF3RQ99062 836 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PSD2Q9BQI7 771 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 CPPED1Q9BRF8 314 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 C11orf54Q9H0W9 315 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 TMEM27Q9HBJ8 222 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 TCF7L1Q9HCS4 588 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 TREM1Q9NP99 234 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 HEBP1Q9NRV9 189 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 AHDC1Q5TGY3 1603 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ASPDHA6ND91 283 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 MYADML2A6NDP7 307 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 POM121CA8CG34 1229 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 A8MUA0 341 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ARHGAP33O14559 1287 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ASGR1P07306 291 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ANXA3P12429 323 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 HLA-EP13747 358 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ELNP15502 786 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 BPIP17213 487 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 GSTM3P21266 225 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 RPL35P42766 123 aaKnown RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 KCNC1P48547 511 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PNLIPRP1P54315 467 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 BTG3Q14201 252 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ZNF234Q14588 700 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ARHGEF6Q15052 776 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 SOWAHCQ53LP3 525 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PRAMEF14Q5SWL7 426 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PRAMEF17Q5VTA0 474 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PRAMEF13Q5VWM6 474 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 CPZQ66K79 652 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 RANBP10Q6VN20 620 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 GALNTL5Q7Z4T8 443 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 SCD5Q86SK9 330 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 UMODL1-AS1Q8N2C9 162 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 DNAJC5GQ8N7S2 189 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 SIMC1Q8NDZ2 872 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 TOR1AIP2Q8NFQ8 470 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 HUS1BQ8NHY5 278 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 CREB3L1Q96BA8 519 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 CNDP2Q96KP4 475 aaKnown RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 OR5M11Q96RB7 305 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 UHRF1Q96T88 793 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 EXO5Q9H790 373 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 TRPV4Q9HBA0 871 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 VNN3Q9NY84 501 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 HCN3Q9P1Z3 774 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 C5AR2Q9P296 337 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PCDHGA6Q9Y5G7 932 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 TEX46H3BTG2 121 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PTGESO14684 152 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 MUSKO15146 869 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 SCO1O75880 301 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 KCNK2O95069 426 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 GABARAPO95166 117 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ECDO95905 644 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 HLA-DPB1P04440 258 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ALDOBP05062 364 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 S100A6P06703 90 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 SRPRAP08240 638 aaKnown RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 MPC1LP0DKB6 136 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 SDC1P18827 310 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PDHA2P29803 388 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 DDOSTP39656 456 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 STK19P49842 368 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 SELENOWP63302 87 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ZNF763Q0D2J5 394 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 DBPQ10586 325 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 RAB41Q5JT25 222 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 MARCH8Q5T0T0 291 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 IRAK1BP1Q5VVH5 260 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PLAG1Q6DJT9 500 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 REEP3Q6NUK4 255 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 GALNT7Q86SF2 657 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 METTL3Q86U44 580 aaKnown RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 PTRH1Q86Y79 214 aaKnown RBP4.77□□□□□ -1.65
SYNE2-223ENST00000557005 OR52E4Q8NGH9 312 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 ZNF563Q8TA94 476 aa4.77□□□□□ -1.65
SYNE2-223ENST00000557005 KHSRPQ92945 711 aaKnown RBP eCLIP4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms