RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 EID3Q8N140 333 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 KIF2BQ8N4N8 673 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 ACOT4Q8N9L9 421 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 POGLUT1Q8NBL1 392 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 OR5L2Q8NGL0 311 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 OR14A16Q8NHC5 309 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 HUS1BQ8NHY5 278 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 UBTD2Q8WUN7 234 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 SLC44A1Q8WWI5 657 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 NINJ1Q92982 152 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 MAGED4Q96JG8 741 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 WDR41Q9HAD4 459 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 AHSPQ9NZD4 102 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 NINJ2Q9NZG7 142 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 CPSF2Q9P2I0 782 aaKnown RBP6.84□□□□□ -1.31
SCFD1-222ENST00000556768 ERVK-11Q9UQG0 969 aa6.84□□□□□ -1.31
SCFD1-222ENST00000556768 KLF13Q9Y2Y9 288 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-222ENST00000556768 YARS2Q9Y2Z4 477 aaKnown RBP6.84□□□□□ -1.31
SCFD1-222ENST00000556768 SNRNP200O75643 2136 aaKnown RBP6.84□□□□□ -1.31
SCFD1-222ENST00000556768 DOPEY1Q5JWR5 2465 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 UNC79Q9P2D8 2635 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 ANKRD12Q6UB98 2062 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 EXOC1LA0A1B0GW35 172 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 ARHGAP10A1A4S6 786 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CYR61O00622 381 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SH3BGRLO75368 114 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 ITGA10O75578 1167 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CLDN9O95484 217 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 ALDOAP04075 364 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SNRPAP09012 282 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 ZNF24P17028 368 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CD33P20138 364 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 ATP5A1P25705 553 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 TRHRP34981 398 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SSR4P51571 173 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CCNG1P51959 295 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 ARFIP1P53367 373 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 KCNK10P57789 538 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 MLF1P58340 268 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 DLG1Q12959 904 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SLAMF1Q13291 335 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 GTF2H2Q13888 395 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SETDB1Q15047 1291 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 PCBP2Q15366 365 aaKnown RBP eCLIP6.83□□□□□ -1.321e-6■■■□□ 18.2
SCFD1-222ENST00000556768 CPSF6Q16630 551 aaKnown RBP eCLIP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 C21orf62-AS1Q17RA5 79 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 ZNF324BQ6AW86 544 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 GRHL2Q6ISB3 625 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 GTF2H2CQ6P1K8 395 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 TRIM46Q7Z4K8 759 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CLNKQ7Z7G1 428 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 GPR180Q86V85 440 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SCUBE1Q8IWY4 988 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CENPLQ8N0S6 344 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SHISA5Q8N114 240 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CYP4Z2PQ8N1L4 340 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 MORN4Q8NDC4 146 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 ZNF473Q8WTR7 871 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 TANKQ92844 425 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 PHF21BQ96EK2 531 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SIGLEC12Q96PQ1 595 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 PAFAH2Q99487 392 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 MTERF1Q99551 399 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 MS4A8Q9BY19 250 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 OR51B5Q9H339 312 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CDC42EP4Q9H3Q1 356 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 RPF2Q9H7B2 306 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 PRDM7Q9NQW5 492 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.83□□□□□ -1.325e-6■■■■□ 22.2
SCFD1-222ENST00000556768 PHF11Q9UIL8 331 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 POLEQ07864 2286 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 PCM1Q15154 2024 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 PCSK5Q92824 1860 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 A8MVJ9 347 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 NPIPA5E9PKD4 350 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 H0YIV9 168 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SAP18O00422 153 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CCL21O00585 134 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 E2F3O00716 465 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SLC19A2O60779 497 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SMNDC1O75940 238 aaKnown RBP eCLIP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 NEURL1O76050 574 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 GHRHP01286 108 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 MTHFD2P13995 350 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 CD22P20273 847 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 TPP2P29144 1249 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 IRF9Q00978 393 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 PLIN5Q00G26 463 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 IFT88Q13099 833 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 E2F2Q14209 437 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 C1QL3Q5VWW1 255 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 TRMT10CQ7L0Y3 403 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 PAGE2Q7Z2X7 111 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 GPALPP1Q8IXQ4 340 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 SLC34A3Q8N130 599 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 GHDCQ8N2G8 530 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 NOA1Q8NC60 698 aaKnown RBP6.83□□□□□ -1.32
SCFD1-222ENST00000556768 APCDD1LQ8NCL9 501 aa6.83□□□□□ -1.32
SCFD1-222ENST00000556768 MDS2Q8NDY4 140 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms