RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 BMPERQ8N8U9 685 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 FAM156AQ8NDB6 213 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 OR51Q1Q8NH59 317 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 CCDC115Q96NT0 180 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 HOPXQ9BPY8 73 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 NPLQ9BXD5 320 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 IKZF5Q9H5V7 419 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 PIF1Q9H611 641 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 SPAG4Q9NPE6 437 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 CMTM6Q9NX76 183 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 MS4A12Q9NXJ0 267 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 NDE1Q9NXR1 346 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 TAS2R7Q9NYW3 318 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 EHD3Q9NZN3 535 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 BTNL2Q9UIR0 455 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 NUP214P35658 2090 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 SEC16AO15027 2179 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 CROCCQ5TZA2 2017 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 A0A096LPI6 279 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 PMS2P1A4D2B8 440 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 H0YIG0 161 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 NME4O00746 187 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 POLR1CO15160 346 aaPredicted RBP9.61□□□□□ -0.87
SRP54-208ENST00000555557 NVLO15381 856 aaKnown RBP9.61□□□□□ -0.87
SRP54-208ENST00000555557 FGF17O60258 216 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 TBX19O60806 448 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 B4GALT2O60909 372 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 SCRG1O75711 98 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 HOXB9P17482 250 aaPredicted RBP9.61□□□□□ -0.87
SRP54-208ENST00000555557 CCKBRP32239 447 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 SOX11P35716 441 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 ARSFP54793 590 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 FOLH1Q04609 750 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 HSPB3Q12988 150 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 ILKQ13418 452 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 GAB1Q13480 694 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 CEACAM7Q14002 265 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 LRIF1Q5T3J3 769 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 MSANTD1Q6ZTZ1 278 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 SCUBE1Q8IWY4 988 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 ULK2Q8IYT8 1036 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 OR5AK3PQ8NH89 298 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 SUN3Q8TAQ9 357 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 DOK4Q8TEW6 326 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 COL26A1Q96A83 441 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 TMEM125Q96AQ2 219 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 CCDC124Q96CT7 223 aaKnown RBP9.61□□□□□ -0.87
SRP54-208ENST00000555557 ANKRD27Q96NW4 1050 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 GBP5Q96PP8 586 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 TMEM121BQ9BXQ6 578 aaPredicted RBP9.61□□□□□ -0.87
SRP54-208ENST00000555557 GLIPR2Q9H4G4 154 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 TMEM181Q9P2C4 612 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 SPACA6W5XKT8 324 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 DMXL1Q9Y485 3027 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 SCN2AQ99250 2005 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 ADAMTS20P59510 1910 aa9.61□□□□□ -0.87
SRP54-208ENST00000555557 TRBV5-3A0A0A0MS03 114 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 A0A1B0GX78 115 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 PRORSD1PA6NEY8 169 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 CFAP73A6NFT4 308 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 DSCR3O14972 297 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 FOXD2O60548 495 aaPredicted RBP9.6□□□□□ -0.87
SRP54-208ENST00000555557 ERN1O75460 977 aaKnown RBP9.6□□□□□ -0.87
SRP54-208ENST00000555557 MT-CO3P00414 261 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 NPPAP01160 153 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 RNH1P13489 461 aaKnown RBP9.6□□□□□ -0.87
SRP54-208ENST00000555557 FRKP42685 505 aaPredicted RBP9.6□□□□□ -0.87
SRP54-208ENST00000555557 XCR1P46094 333 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 TRPC1P48995 793 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 XKP51811 444 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 NCBP2P52298 156 aaKnown RBP eCLIP9.6□□□□□ -0.87
SRP54-208ENST00000555557 CASP9P55211 416 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 FOXL2P58012 376 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 SKP1P63208 163 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 BTG2P78543 158 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 ISXQ2M1V0 245 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 RUNDC3AQ59EK9 446 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 CDCP2Q5VXM1 449 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 OR52E8Q6IFG1 317 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 RHBDD2Q6NTF9 364 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 C10orf111Q8N326 155 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 FBXW8Q8N3Y1 598 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 OR4K14Q8NGD5 310 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 PNPT1Q8TCS8 783 aaKnown RBP9.6□□□□□ -0.87
SRP54-208ENST00000555557 CLIP3Q96DZ5 547 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 ZNF681Q96N22 645 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 AMDHD1Q96NU7 426 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 BBS4Q96RK4 519 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 CMKLR1Q99788 373 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 THUMPD3Q9BV44 507 aaKnown RBP9.6□□□□□ -0.87
SRP54-208ENST00000555557 TRIM4Q9C037 500 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 CXorf36Q9H7Y0 433 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 ZNF304Q9HCX3 659 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 SLC7A8Q9UHI5 535 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 ACSL6Q9UKU0 697 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 PCDHGB4Q9UN71 923 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 USP22Q9UPT9 525 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 PCDHGA1Q9Y5H4 931 aa9.6□□□□□ -0.87
SRP54-208ENST00000555557 SNX8Q9Y5X2 465 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms