RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 MDC1Q14676 2089 aaKnown RBP24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 A0A0J9YY10 115 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 MYOCOSA0A1B0GUC4 107 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 PGRMC2O15173 223 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 B4GALT2O60909 372 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 TFAP2AP05549 437 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 ZNF888P0CJ79 500 aaPredicted RBP24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 NCBP2P52298 156 aaKnown RBP eCLIP24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 SUZ12Q15022 739 aaKnown RBP24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 ZC3H12BQ5HYM0 836 aaKnown RBP24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 FOXB2Q5VYV0 432 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 IQCHQ86VS3 1027 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 SFXN5Q8TD22 340 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 ZDHHC1Q8WTX9 485 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 MBOAT4Q96T53 435 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 ZFYVE21Q9BQ24 234 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 LRRC61Q9BV99 259 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 EPB41L1Q9H4G0 881 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 SOX17Q9H6I2 414 aaPredicted RBP24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 REEP1Q9H902 201 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 HRASLS2Q9NWW9 162 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 ORC6Q9Y5N6 252 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 U3KQV3 271 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 A0A1W2PR77 199 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 C19orf67A6NJJ6 358 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 HS6ST1O60243 411 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 PGM3O95394 542 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 PABPC4LP0CB38 370 aaKnown RBP24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 NELFEP18615 380 aaKnown RBP24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 GPC1P35052 558 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 RAD23AP54725 363 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 PPP1R8Q12972 351 aaKnown RBP24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 C1orf61Q13536 156 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 ZNF555Q8NEP9 628 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 BAHD1Q8TBE0 780 aaPredicted RBP24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 RSC1A1Q92681 617 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 SERINC2Q96SA4 455 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 SEMA3GQ9NS98 782 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 GIMAP4Q9NUV9 329 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 FAM118AQ9NWS6 357 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 ZNF451Q9Y4E5 1061 aa24.91■■□□□ 1.58
CCDC88C-205ENST00000553403 A0A0J9YVX5 310 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 PRKRAO75569 313 aaKnown RBP24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 CLIC3O95833 236 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 CSNK2A2P19784 350 aaPredicted RBP24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 PRKACGP22612 351 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 CD38P28907 300 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 HHEXQ03014 270 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 CEBPEQ15744 281 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 C18orf63Q68DL7 685 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 RNF44Q7L0R7 432 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 OOSP2Q86WS3 158 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 ARMC8Q8IUR7 673 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 ZNF786Q8N393 782 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 METTL25Q8N6Q8 603 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 FAM46DQ8NEK8 389 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 MOAP1Q96BY2 351 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 ZNF347Q96SE7 839 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 EPYCQ99645 322 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 MAPKAP1Q9BPZ7 522 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 THSD1Q9NS62 852 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 TMEFF2Q9UIK5 374 aaPredicted RBP24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 PHF11Q9UIL8 331 aa24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 SAMHD1Q9Y3Z3 626 aaKnown RBP24.9■■□□□ 1.58
CCDC88C-205ENST00000553403 ARHGEF17Q96PE2 2063 aaPredicted RBP24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 SMIM31A0A1B0GVY4 71 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 TRIM64A6NGJ6 449 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 GLOD5A6NK44 160 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 C5orf58C9J3I9 102 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 SH3BP5O60239 455 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 ERAL1O75616 437 aaKnown RBP24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 OPN1SWP03999 348 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 WNT1P04628 370 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 TUBA4AP68366 448 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 MANEAQ5SRI9 462 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 TNFAIP8L2Q6P589 184 aaPredicted RBP24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 CEP68Q76N32 757 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 SFTPA2Q8IWL1 248 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 OFCC1Q8IZS5 231 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 AVL9Q8NBF6 648 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 SPPL2AQ8TCT8 520 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 CNRIP1Q96F85 164 aaPredicted RBP24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 SLC35G5Q96KT7 338 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 EVA1BQ9NVM1 165 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 TUBA8Q9NY65 449 aaPredicted RBP24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 PSME2Q9UL46 239 aa24.89■■□□□ 1.58
CCDC88C-205ENST00000553403 OR5K3A6NET4 321 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 DIRAS1O95057 198 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 CSF2P04141 144 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 NR2F6P10588 404 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 ATP6V1B1P15313 513 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 ZNF10P21506 573 aaPredicted RBP24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 LSSP48449 732 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 NR1H2P55055 460 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 BHLHB9Q6PI77 547 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 SPEM1Q8N4L4 309 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 SUN3Q8TAQ9 357 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 SLC38A5Q8WUX1 472 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 GEMIN6Q8WXD5 167 aaKnown RBP24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 PRDM9Q9NQV7 894 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms