RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PSMB5P28074 263 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CASP3P42574 277 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 SLC15A1P46059 708 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 PNLIPRP1P54315 467 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 MXD1Q05195 221 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 EIF4HQ15056 248 aaKnown RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 FBXO43Q4G163 708 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 PLAG1Q6DJT9 500 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 RAET1GQ6H3X3 334 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TCTN3Q6NUS6 607 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TUBA3EQ6PEY2 450 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 C19orf48Q6RUI8 117 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TMIGD1Q6UXZ0 262 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 SFTPA1Q8IWL2 248 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 SLC34A3Q8N130 599 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 AMER3Q8N944 861 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ANKRD53Q8N9V6 530 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 WDR34Q96EX3 536 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 DTD2Q96FN9 168 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TMEM19Q96HH6 336 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CAPNS2Q96L46 248 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 LRRC3BQ96PB8 259 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 NEDD4LQ96PU5 975 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 F2RL3Q96RI0 385 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TAPBPLQ9BX59 468 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CDCA4Q9BXL8 241 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF717Q9BY31 904 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ZDHHC5Q9C0B5 715 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TPK1Q9H3S4 243 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 MVB12BQ9H7P6 319 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CCDC177Q9NQR7 707 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CTPS2Q9NRF8 586 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CUEDC1Q9NWM3 386 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TMEM98Q9Y2Y6 226 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 UGT2A1Q9Y4X1 527 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 KLK4Q9Y5K2 254 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 COL4A3Q01955 1670 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 DSPPQ9NZW4 1301 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 PNMA8CA0A1B0GUJ8 204 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PRAMEF27A3QJZ7 478 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 LOC110117498-PIK3R3F6TDL0 507 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 H3BQ06 376 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 QSOX1O00391 747 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 RGS5O15539 181 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 OR10H3O60404 316 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 MMP20O60882 483 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 POP7O75817 140 aaKnown RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 APOL3O95236 402 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PTTG1O95997 202 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 HBQ1P09105 142 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PTX3P26022 381 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 TNFSF8P32971 234 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 BMPR1AP36894 532 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 NNMTP40261 264 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 ERVFC1P60507 584 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 IFITM2Q01629 132 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SYPL1Q16563 259 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 BCL7AQ4VC05 210 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SPANXN2Q5MJ10 180 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF697Q5TEC3 545 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 NXNL2Q5VZ03 156 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 HIST2H2AA3Q6FI13 130 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 REEP3Q6NUK4 255 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 ERAP2Q6P179 960 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SLC39A5Q6ZMH5 540 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SZRD1Q7Z422 152 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SLC9B2Q86UD5 537 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 CCDC190Q86UF4 302 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 TCEANCQ8N8B7 351 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 FAM46DQ8NEK8 389 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 OR5D16Q8NGK9 328 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 GPR151Q8TDV0 419 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 EXOSC8Q96B26 276 aaKnown RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PDXPQ96GD0 296 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 CRELD1Q96HD1 420 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 UCN2Q96RP3 112 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 YME1L1Q96TA2 773 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 MAPKAP1Q9BPZ7 522 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 ASPNQ9BXN1 380 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 NLNQ9BYT8 704 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 HOXD1Q9GZZ0 328 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SERHL2Q9H4I8 314 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SLC25A19Q9HC21 320 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 TM7SF3Q9NS93 570 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 CLN6Q9NWW5 311 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 NFKBIL1Q9UBC1 381 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 TAC3Q9UHF0 121 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 MUTYHQ9UIF7 546 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 KCND3Q9UK17 655 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 TBC1D24Q9ULP9 559 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 MAPRE3Q9UPY8 281 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 ASF1AQ9Y294 204 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PEX16Q9Y5Y5 336 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 AP1M2Q9Y6Q5 423 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 A3GALT2U3KPV4 340 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 EFCAB10A6NFE3 127 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 HEPACAM2A8MVW5 462 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 ANHXE9PGG2 379 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 M0R3H8 397 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms