RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 ZNF831Q5JPB2 1677 aa4.22□□□□□ -1.73
LIMA1-205ENST00000550592 NEDD4P46934 1319 aa4.21□□□□□ -1.73
LIMA1-205ENST00000550592 EVC2Q86UK5 1308 aa4.21□□□□□ -1.73
LIMA1-205ENST00000550592 CENPJQ9HC77 1338 aaPredicted RBP4.21□□□□□ -1.73
LIMA1-205ENST00000550592 MON2Q7Z3U7 1717 aa4.21□□□□□ -1.73
LIMA1-205ENST00000550592 TMEM129A0AVI4 362 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 SERINC4A6NH21 518 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 CEACAM4O75871 244 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 ZFAND5O76080 213 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 IGKV3-20P01619 116 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 IGLV1-44P01699 117 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 SBK2P0C263 348 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 MYOGP15173 224 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 CAPN2P17655 700 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 SGSM1Q2NKQ1 1148 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 PLPP4Q5VZY2 271 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 OLFM4Q6UX06 510 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 TMEM126BQ8IUX1 230 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 SMYD1Q8NB12 490 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 CLEC1AQ8NC01 280 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 RNF149Q8NC42 400 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 RNASE8Q8TDE3 154 aaKnown RBP4.21□□□□□ -1.74
LIMA1-205ENST00000550592 SEPT8Q92599 483 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 GGHQ92820 318 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 CFAP36Q96G28 342 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 ZNF486Q96H40 463 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-205ENST00000550592 KRT12Q99456 494 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 CCM2Q9BSQ5 444 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 CLEC7AQ9BXN2 247 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 HOXD1Q9GZZ0 328 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 VPS33BQ9H267 617 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 PLCXD1Q9NUJ7 323 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 APPL1Q9UKG1 709 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 PPP1R3CQ9UQK1 317 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 FOXA2Q9Y261 457 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-205ENST00000550592 CHD8Q9HCK8 2581 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 BAHCC1Q9P281 2608 aa4.21□□□□□ -1.74
LIMA1-205ENST00000550592 SPTBN5Q9NRC6 3674 aaKnown RBP4.2□□□□□ -1.74
LIMA1-205ENST00000550592 BCORQ6W2J9 1755 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 MRC1P22897 1456 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 NPC1L1Q9UHC9 1359 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 VEGFDO43915 354 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 MT-ND3P03897 115 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 FOSL2P15408 326 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 CRIP2P52943 208 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-205ENST00000550592 CBX3Q13185 183 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 GPR50Q13585 617 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 PDE7AQ13946 482 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 CEACAM7Q14002 265 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 MAPK11Q15759 364 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 LRRC37A5PQ49AS3 106 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 IFI44LQ53G44 452 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 ZNF776Q68DI1 518 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-205ENST00000550592 C17orf107Q6ZR85 190 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 Q6ZRP5 223 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 ZNF444Q8N0Y2 327 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-205ENST00000550592 CHURC1Q8WUH1 139 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 FAM46BQ96A09 425 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 GAL3ST4Q96RP7 486 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 PCDHB18PQ96TA0 734 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 ASCL2Q99929 193 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 WWTR1Q9GZV5 400 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 MTHFD2LQ9H903 347 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-205ENST00000550592 VIPAS39Q9H9C1 493 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 HMG20BQ9P0W2 317 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 MRPS28Q9Y2Q9 187 aaKnown RBP4.2□□□□□ -1.74
LIMA1-205ENST00000550592 COL5A3P25940 1745 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-205ENST00000550592 ANKRD31Q8N7Z5 1873 aa4.2□□□□□ -1.74
LIMA1-205ENST00000550592 RGPD2P0DJD1 1756 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 hCG_38984A0A1B0GV85 526 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 RNF103O00237 685 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 RTCAO00442 366 aaKnown RBP4.19□□□□□ -1.74
LIMA1-205ENST00000550592 MAGEB2O15479 319 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 EDIL3O43854 480 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 MAGEC1O60732 1142 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 THEGLP0DJG4 465 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 P4HA1P13674 534 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 CTNNA2P26232 953 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 ATP6V1E1P36543 226 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 OPRL1P41146 370 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 SLC1A3P43003 542 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 TSFMP43897 325 aaKnown RBP4.19□□□□□ -1.74
LIMA1-205ENST00000550592 SMSP52788 366 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 MTF1Q14872 753 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 HLA-BQ31612 363 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 CD164L2Q6UWJ8 174 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 ZNF329Q86UD4 541 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 SERPINA12Q8IW75 414 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 SLC22A15Q8IZD6 547 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 THEM5Q8N1Q8 247 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 RTL3Q8N8U3 475 aaKnown RBP4.19□□□□□ -1.74
LIMA1-205ENST00000550592 GPATCH11Q8N954 259 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 SLC35C1Q96A29 364 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 ULK4Q96C45 1275 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 BPIFA2Q96DR5 249 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 EEF2KMTQ96G04 330 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 ZNF300Q96RE9 604 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-205ENST00000550592 DDX50Q9BQ39 737 aaKnown RBP4.19□□□□□ -1.74
LIMA1-205ENST00000550592 LRRC2Q9BYS8 371 aa4.19□□□□□ -1.74
LIMA1-205ENST00000550592 BARHL1Q9BZE3 327 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms