RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 THRAP10827 490 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 UGT2B7P16662 529 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 EEF1DP29692 281 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 PRDX3P30048 256 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CCKBRP32239 447 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 RPA3P35244 121 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 MAGEA12P43365 314 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 KPNA2P52292 529 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 PPP1CAP62136 330 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 FASTKQ14296 549 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TSNQ15631 228 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 HFEQ30201 348 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 C2orf76Q3KRA6 126 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 HSP90B2PQ58FF3 399 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ARHGAP11AQ6P4F7 1023 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 C11orf88Q6PI97 169 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 SPESP1Q6UW49 350 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TIFABQ6ZNK6 161 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 PLEKHM3Q6ZWE6 761 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 PRSS42Q7Z5A4 293 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 B3GNT8Q7Z7M8 397 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 MARCH9Q86YJ5 346 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TDRPQ86YL5 185 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 GPSM1Q86YR5 675 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 RASGRP3Q8IV61 690 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CCDC28AQ8IWP9 274 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 RIBC1Q8N443 379 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 C10orf53Q8N6V4 93 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 LMNTD1Q8N9Z9 388 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 HMGCLL1Q8TB92 370 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 STAG3L4Q8TBR4 150 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 BRIX1Q8TDN6 353 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 KCTD4Q8WVF5 259 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 SMPDL3AQ92484 453 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 NXNL1Q96CM4 212 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 MED8Q96G25 268 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 OR2A14Q96R47 310 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 JMJD8Q96S16 334 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 MAP3K3Q99759 626 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CMKLR1Q99788 373 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 EGFL8Q99944 293 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 SCNM1Q9BWG6 230 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TP63Q9H3D4 680 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 NELFAQ9H3P2 528 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ALG9Q9H6U8 611 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CHCHD3Q9NX63 227 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 SPHK1Q9NYA1 384 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 UTP6Q9NYH9 597 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TAS2R10Q9NYW0 307 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TAS2R3Q9NYW6 316 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 PLA2G3Q9NZ20 509 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 MRPL15Q9P015 296 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 STOX2Q9P2F5 926 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 MID2Q9UJV3 735 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 KLK13Q9UKR3 277 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 IKZF3Q9UKT9 509 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 POMT2Q9UKY4 750 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 KLHL20Q9Y2M5 609 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 LOXL2Q9Y4K0 774 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 OARD1Q9Y530 152 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CCDC187A0A096LP49 1063 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 NCF1BA6NI72 391 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 EFCAB7A8K855 629 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 SYCE1LA8MT33 242 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 NCF1CA8MVU1 366 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 SUPT3HB4E1H0 165 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 E7ENX8 843 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 HGSO14964 777 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 DIAPH2O60879 1101 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 SUPT3HO75486 399 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CCNDBP1O95273 360 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 ZBTB11O95625 1053 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 TOP3BO95985 862 aaKnown RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 RBP1P09455 135 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 ANKRD34CP0C6C1 535 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 NCF1P14598 390 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 IMPA1P29218 277 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CMPK1P30085 196 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 SDHAP31040 664 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 GRK5P34947 590 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 TRHRP34981 398 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 GLRBP48167 497 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CSRP3P50461 194 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 PDX1P52945 283 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 HSD11B2P80365 405 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CDKL1Q00532 357 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 TAP2Q03519 686 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 TLE1Q04724 770 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 DLG1Q12959 904 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 EIF3IQ13347 325 aaKnown RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 TGFBIQ15582 683 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 OR4D1Q15615 310 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 PPP1R3AQ16821 1122 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 SLC5A12Q1EHB4 618 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 KRT71Q3SY84 523 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 BEND6Q5SZJ8 279 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CAPN13Q6MZZ7 669 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 AGTRAPQ6RW13 159 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CYP20A1Q6UW02 462 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 SBSNQ6UWP8 590 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms