RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SSX2Q16385 188 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 TMEM44Q2T9K0 475 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 UGT3A2Q3SY77 523 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 TCEAL5Q5H9L2 206 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 LAIR2Q6ISS4 152 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 OGFOD3Q6PK18 319 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 GPRIN3Q6ZVF9 776 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 Q6ZVU0 165 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 EFL1Q7Z2Z2 1120 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 SNX20Q7Z614 316 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 C12orf40Q86WS4 652 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 PHC2Q8IXK0 858 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 MINDY1Q8N5J2 469 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 GPR26Q8NDV2 337 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 CLHC1Q8NHS4 586 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 LKAAEAR1Q8TD35 194 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 C19orf60Q96EN9 201 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 MRPL48Q96GC5 212 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 ADAD1Q96M93 576 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 VRK1Q99986 396 aaPredicted RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 FAM83CQ9BQN1 747 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 BOCQ9BWV1 1114 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 MTIF3Q9H2K0 278 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 KAT8Q9H7Z6 458 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 PCDHB16Q9NRJ7 776 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 FBXL12Q9NXK8 326 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 SLAMF8Q9P0V8 285 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 ABCD2Q9UBJ2 740 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 SLC25A13Q9UJS0 675 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 ERVW-1Q9UQF0 538 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 FNDC3AQ9Y2H6 1198 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 PRSS21Q9Y6M0 314 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 TRANK1O15050 2925 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 NPEPPSL1A6NEC2 478 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 EFCAB10A6NFE3 127 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 IQCF5A8MTL0 148 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 PRMT5O14744 637 aaPredicted RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 ECI2O75521 394 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 LCKP06239 509 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 FCER2P06734 321 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 ACRV1P26436 265 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 HK3P52790 923 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 DGKQP52824 942 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 OR4D2P58180 307 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 PTSQ03393 145 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 CHRNB3Q05901 458 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 GPM6BQ13491 265 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 TSNQ15631 228 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 GAB4Q2WGN9 574 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 USP39Q53GS9 565 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 KRTCAP3Q53RY4 240 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 SULT1C3Q6IMI6 304 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 SYCE2Q6PIF2 218 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 CERS6Q6ZMG9 384 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF517Q6ZMY9 492 aaPredicted RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 TPRG1Q6ZUI0 275 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 NOXA1Q86UR1 476 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 SERPINA9Q86WD7 417 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 STK40Q8N2I9 435 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 C12orf76Q8N812 135 aaPredicted RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 PTGR2Q8N8N7 351 aaPredicted RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 UBASH3BQ8TF42 649 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 CA5BP1Q8WTZ4 195 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 EEF1AKMT1Q8WVE0 214 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 TMEM125Q96AQ2 219 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 ELP4Q96EB1 424 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 YIPF6Q96EC8 236 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 AURKBQ96GD4 344 aaPredicted RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 MBOAT4Q96T53 435 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 TRMOQ9BU70 441 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 PAPOLGQ9BWT3 736 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 C1QTNF3Q9BXJ4 246 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 NUFIP1Q9UHK0 495 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 PCDHGB6Q9Y5F9 930 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 HRH3Q9Y5N1 445 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 ZFC3H1O60293 1989 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 TSPAN11A1L157 253 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 BBIP1A8MTZ0 92 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 MASP2O00187 686 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PPP6CO00743 305 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CLDN4O14493 209 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 TXNL1O43396 289 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 AIREO43918 545 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 VPS26AO75436 327 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SIX3O95343 332 aaPredicted RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CST1P01037 141 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 MT-ND2P03891 347 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 HOXD4P09016 255 aaPredicted RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 C1SP09871 688 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PSKH1P11801 424 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CYP2A7P20853 494 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SEMG2Q02383 582 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 RIN1Q13671 783 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CHRNA6Q15825 494 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 DUSP6Q16828 381 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SPANXN2Q5MJ10 180 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 LRRC66Q68CR7 880 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PNCKQ6P2M8 343 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CFAP77Q6ZQR2 320 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms