RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 C7orf57Q8NEG2 295 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 OR2L5Q8NG80 312 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 NUBPLQ8TB37 319 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 SLC22A8Q8TCC7 542 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 ZNF721Q8TF20 911 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 SMPDL3BQ92485 455 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 ZNF592Q92610 1267 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 PIGTQ969N2 578 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 ISL2Q96A47 359 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 SPACA9Q96E40 222 aaPredicted RBP10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 Q96MF0 132 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 CSF3RQ99062 836 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 PRDM14Q9GZV8 571 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 XAB2Q9HCS7 855 aaKnown RBP10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 COPS7AQ9UBW8 275 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 ZANQ9Y493 2812 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 NCKAP5O14513 1909 aa10.68□□□□□ -0.7
CLSTN3-209ENST00000539982 CD8B2A6NJW9 211 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 EEF1E1-BLOC1S5C9J1V9 151 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 CASKO14936 926 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 EEF1E1O43324 174 aaKnown RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 ETHE1O95571 254 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 AHSGP02765 367 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 C1GALT1C1LP0DN25 315 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 GSTM2P28161 218 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 HPDP32754 393 aaPredicted RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 VPS41P49754 854 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 MTTPP55157 894 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 ADPRMQ3LIE5 342 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 RBM20Q5T481 1227 aaKnown RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 TRIM40Q6P9F5 258 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 ABHD17CQ6PCB6 329 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 LYPD8Q6UX82 237 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 TMEM139Q8IV31 216 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 DND1Q8IYX4 353 aaKnown RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 AGGF1Q8N302 714 aaeCLIP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 MAIP1Q8WWC4 291 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 CCT6BQ92526 530 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 PDLIM5Q96HC4 596 aaKnown RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 SENP5Q96HI0 755 aaPredicted RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 SIGLEC10Q96LC7 697 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 JSRP1Q96MG2 331 aaPredicted RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 RUNDC3BQ96NL0 473 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 SERPINB12Q96P63 405 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 WDR83Q9BRX9 315 aaKnown RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 REXO4Q9GZR2 422 aaKnown RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 NT5DC2Q9H857 520 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 HOMER3Q9NSC5 361 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 CHCHD2Q9Y6H1 151 aaPredicted RBP10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 ARID1AO14497 2285 aa10.67□□□□□ -0.7
CLSTN3-209ENST00000539982 NINQ8N4C6 2090 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 MXRA5Q9NR99 2828 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 SH3D21A4FU49 640 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 MBD3L4A6NDZ8 208 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 MBD3L3A6NE82 208 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 MBD3L5A6NJ08 208 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 GOLGA8MH3BSY2 632 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 LDB3O75112 727 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 CLEC3AO75596 197 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 TRAPPC6AO75865 159 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 TBX6O95947 436 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 FGGP02679 453 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 GNAZP19086 355 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 GDF1P27539 372 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 CERS1P27544 350 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 SERPINB3P29508 390 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 MAGEA3P43357 314 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 PDAP1Q13442 181 aaKnown RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 VASNQ6EMK4 673 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 SBSNQ6UWP8 590 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 SLCO4C1Q6ZQN7 724 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 SYDE1Q6ZW31 735 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 YTHDF3Q7Z739 585 aaKnown RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 KRT78Q8N1N4 520 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 MBD3L2Q8NHZ7 208 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 GABPB2Q8TAK5 448 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 TRIB1Q96RU8 372 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 DESI2Q9BSY9 194 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 DOHHQ9BU89 302 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 RBM24Q9BX46 236 aaKnown RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 CALHM2Q9HA72 323 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 LYRM4Q9HD34 91 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 PRDM7Q9NQW5 492 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 RYDENQ9NUL5 291 aaKnown RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 CNOT11Q9UKZ1 510 aaKnown RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 PYCARDQ9ULZ3 195 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 CAMK2AQ9UQM7 478 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 EIF3LQ9Y262 564 aaKnown RBP10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 IKBKGQ9Y6K9 419 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 KIAA1549Q9HCM3 1950 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 FREM3P0C091 2139 aa10.66□□□□□ -0.7
CLSTN3-209ENST00000539982 ANKRD33BA6NCL7 494 aa10.65□□□□□ -0.7
CLSTN3-209ENST00000539982 ANKDD1BA6NHY2 528 aa10.65□□□□□ -0.7
CLSTN3-209ENST00000539982 TRIM3O75382 744 aaPredicted RBP10.65□□□□□ -0.7
CLSTN3-209ENST00000539982 ERN1O75460 977 aaKnown RBP10.65□□□□□ -0.7
CLSTN3-209ENST00000539982 ACSL3O95573 720 aa10.65□□□□□ -0.7
CLSTN3-209ENST00000539982 KRT14P02533 472 aa10.65□□□□□ -0.7
CLSTN3-209ENST00000539982 IGKV3-11P04433 115 aa10.65□□□□□ -0.7
CLSTN3-209ENST00000539982 HPNP05981 417 aa10.65□□□□□ -0.7
CLSTN3-209ENST00000539982 CCDC175P0C221 793 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms