RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 SSX2Q16385 188 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 MAPKAPK3Q16644 382 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 SLC39A12Q504Y0 691 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 TCEAL5Q5H9L2 206 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 C9orf57Q5W0N0 161 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 CNIH2Q6PI25 160 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 OR4A15Q8NGL6 344 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 OR2T35Q8NGX2 323 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 SCARB1Q8WTV0 552 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PMM1Q92871 262 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 SMARCD1Q96GM5 515 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 BARD1Q99728 777 aaKnown RBP10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PAPOLGQ9BWT3 736 aaKnown RBP10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 BTBD1Q9H0C5 482 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 LCHNA4D1U4 455 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 FAM220BPB1ANY3 271 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 D6RAR5 112 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 RP2O75695 350 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 CFDP00746 253 aaPredicted RBP10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 SCG5P05408 212 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 FGF2P09038 288 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 RHCEP18577 417 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PTAFRP25105 342 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 GATMP50440 423 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 VSX2P58304 361 aaPredicted RBP10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 NFKB2Q00653 900 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 SLC6A3Q01959 620 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PUM1Q14671 1186 aaKnown RBP eCLIP10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 SMCO1Q147U7 214 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 ANKS6Q68DC2 871 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 DLEU7Q6UYE1 221 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 CEP68Q76N32 757 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 KANSL1Q7Z3B3 1105 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 CNTN4Q8IWV2 1026 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 C12orf29Q8N999 325 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 ELP5Q8TE02 316 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 EDEM1Q92611 657 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 ULK4Q96C45 1275 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 KCTD7Q96MP8 289 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 SFXN2Q96NB2 322 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 KCNA7Q96RP8 456 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 CRB3Q9BUF7 120 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 ELOVL4Q9GZR5 314 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 FN3KQ9H479 309 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 UBE2ZQ9H832 354 aaPredicted RBP10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PRDM9Q9NQV7 894 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PCDHGA6Q9Y5G7 932 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 FAM74A7A6NL05 159 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 SGK494L7N484 410 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 MPZL2O60487 215 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 GREM1O60565 184 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PIGRP01833 764 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 MMP12P39900 470 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PBX2P40425 430 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 ASPAP45381 313 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 NCF4Q15080 339 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 FAM74A3Q4VXF1 159 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 CARD16Q5EG05 197 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 UNC5DQ6UXZ4 953 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 WASH2PQ6VEQ5 465 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 DDX53Q86TM3 631 aaKnown RBP10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PAQR7Q86WK9 346 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 C12orf40Q86WS4 652 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 WDSUB1Q8N9V3 476 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 C11orf24Q96F05 449 aaPredicted RBP10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 MSLNLQ96KJ4 702 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 CXorf58Q96LI9 332 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 OR5M11Q96RB7 305 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 PKMYT1Q99640 499 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 EQTNQ9NQ60 294 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 MS4A12Q9NXJ0 267 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 MIOXQ9UGB7 285 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 POMT2Q9UKY4 750 aa10.41□□□□□ -0.74
CLSTN3-207ENST00000537408 HYKKA2RU49 373 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 SUPT3HB4E1H0 165 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 RFXAPO00287 272 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 IRF1P10914 325 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 NOS2P35228 1153 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 ST8SIA6P61647 398 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 KLHL26Q53HC5 615 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 AVPI1Q5T686 147 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 C1orf52Q8N6N3 182 aaKnown RBP10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 B3GALNT2Q8NCR0 500 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 OR11H4Q8NGC9 324 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 TEX37Q96LM6 180 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 RTP3Q9BQQ7 232 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 CDCA4Q9BXL8 241 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 FBXO44Q9H4M3 255 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 ARNT2Q9HBZ2 717 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 SEMA4BQ9NPR2 832 aaPredicted RBP10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 THUMPD1Q9NXG2 353 aaKnown RBP10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 CNOT2Q9NZN8 540 aaKnown RBP10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 STYXL1Q9Y6J8 313 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 H3BNC9 293 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 GPR32O75388 356 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 EIF3GO75821 320 aaKnown RBP eCLIP10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 OAZ2O95190 189 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 PTPN3P26045 913 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 NHLRC3Q5JS37 347 aa10.4□□□□□ -0.74
CLSTN3-207ENST00000537408 MANEALQ5VSG8 457 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms