RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 INO80CQ6PI98 192 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-208ENST00000537004 ANKFN1Q8N957 763 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 ZNF740Q8NDX6 193 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 TNIP2Q8NFZ5 429 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 OR8J2Q8NGG1 315 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 ZFPM2Q8WW38 1151 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 STARD8Q92502 1023 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 UBE2E3Q969T4 207 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 CIB1Q99828 191 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 MENTQ9BUN1 341 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 SPRY4Q9C004 299 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 KAT8Q9H7Z6 458 aaKnown RBP11.32□□□□□ -0.6
CLIP1-208ENST00000537004 COQ10BQ9H8M1 238 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 RAB26Q9ULW5 256 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 PCDHB11Q9Y5F2 797 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 GNG14A0A1W2PPG7 69 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SCAMP2O15127 329 aaKnown RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 GSTA4O15217 222 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 TOX3O15405 576 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 DENRO43583 198 aaKnown RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 PCDH7O60245 1069 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 GMNNO75496 209 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 STK17BO94768 372 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 FCGR1AP12314 374 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 NDUFS1P28331 727 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 PIK3CBP42338 1070 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 HNRNPFP52597 415 aaKnown RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 POLE2P56282 527 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 WNT3P56703 355 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 HKDC1Q2TB90 917 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 ANKRD26P1Q6NSI1 321 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 GALNT18Q6P9A2 607 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 TMEM154Q6P9G4 183 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 TMIGD1Q6UXZ0 262 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 CEACAM20Q6UY09 585 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 C17orf64Q86WR6 236 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 IL22RA1Q8N6P7 574 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 PAPD5Q8NDF8 572 aaKnown RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SLC41A2Q96JW4 573 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 Q9H521 79 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 FAM120CQ9NX05 1096 aaKnown RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SPATA7Q9P0W8 599 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 TAC3Q9UHF0 121 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 ICKQ9UPZ9 632 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 TSC22D4Q9Y3Q8 395 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 V9GYQ6 96 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SPENQ96T58 3664 aaKnown RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 ELOVL7A1L3X0 281 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 TLCD2A6NGC4 264 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SLC9B1P1A6NJY1 282 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 H0YJX3 145 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SAP18O00422 153 aaKnown RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SCN2BO60939 215 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 TGFB1P01137 390 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 LYNP07948 512 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 LINGO3P0C6S8 592 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 LAMP1P11279 417 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 PVRP15151 417 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 HPCAL1P37235 193 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 TRPC1P48995 793 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 UCNP55089 124 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 PHEXP78562 749 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 NRF1Q16656 503 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 MANEAQ5SRI9 462 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 ARMC6Q6NXE6 501 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 PCSK4Q6UW60 755 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 COMMD6Q7Z4G1 85 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 AMIGO1Q86WK6 493 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 ADGRF3Q8IZF5 1079 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 KRT78Q8N1N4 520 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SMPDL3AQ92484 453 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 FIG4Q92562 907 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 FAM120BQ96EK7 910 aaKnown RBP11.31□□□□□ -0.6
CLIP1-208ENST00000537004 PANX1Q96RD7 426 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SEPHS2Q99611 448 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 TBCDQ9BTW9 1192 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 ULBP3Q9BZM4 244 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 B3GNT4Q9C0J1 378 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 OR51B5Q9H339 312 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 MVB12BQ9H7P6 319 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 GORASP2Q9H8Y8 452 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SIRT5Q9NXA8 310 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SPHK1Q9NYA1 384 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SEMA5BQ9P283 1151 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 SCOCQ9UIL1 159 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 MAPRE3Q9UPY8 281 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 AP4B1Q9Y6B7 739 aa11.31□□□□□ -0.6
CLIP1-208ENST00000537004 GABRR3A8MPY1 467 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 FAM220BPB1ANY3 271 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 RAD1O60671 282 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 PRB1P04280 392 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 ST6GAL1P15907 406 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CD82P27701 267 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 PSMB5P28074 263 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 ZNF763Q0D2J5 394 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 MAP7Q14244 749 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 PDK3Q15120 406 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 GPR19Q15760 415 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CPTPQ5TA50 214 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms