RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 METTL21AQ8WXB1 218 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 ARL8AQ96BM9 186 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 KCNA7Q96RP8 456 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 PAIP2Q9BPZ3 127 aaKnown RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 RBCK1Q9BYM8 510 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 LYRM4Q9HD34 91 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 PRDM7Q9NQW5 492 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 C19orf25Q9UFG5 118 aaPredicted RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 MKL2Q9ULH7 1088 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 DAPP1Q9UN19 280 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 TIMM22Q9Y584 194 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 A0A1W2PQ72 361 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 ARHGAP10A1A4S6 786 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 TMEM114B3SHH9 223 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 AZIN1O14977 448 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 HNRNPRO43390 633 aaKnown RBP9.5□□□□□ -0.89
VPS28-204ENST00000526054 CDC123O75794 336 aaPredicted RBP9.5□□□□□ -0.89
VPS28-204ENST00000526054 SNUPNO95149 360 aaKnown RBP9.5□□□□□ -0.89
VPS28-204ENST00000526054 ETHE1O95571 254 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 HSPA4LO95757 839 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 F10P00742 488 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 SERPINE1P05121 402 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 CELA2AP08217 269 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 STSP08842 583 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 C8orf89P0DMQ9 161 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 GRK2P25098 689 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 HTR6P50406 440 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 TDGF1P3P51864 188 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 LIM2P55344 173 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 KCNK10P57789 538 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 AP2B1P63010 937 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 RUNX2Q13950 521 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 MPP2Q14168 576 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 CHI3L2Q15782 390 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 IMPG1Q17R60 797 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 TTMPQ5BVD1 217 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 ARL13AQ5H913 290 aaPredicted RBP9.5□□□□□ -0.89
VPS28-204ENST00000526054 CYP20A1Q6UW02 462 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 ZNF793Q6ZN11 406 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 QSOX2Q6ZRP7 698 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 RIPOR1Q6ZS17 1223 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 TRIM42Q8IWZ5 723 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 MGARPQ8TDB4 240 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 PSMF1Q92530 271 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 NR4A3Q92570 626 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 MARVELD3Q96A59 401 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 HBEGFQ99075 208 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 SHCBP1LQ9BZQ2 653 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 VN1R1Q9GZP7 353 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.5□□□□□ -0.89
VPS28-204ENST00000526054 FARSBQ9NSD9 589 aaKnown RBP9.5□□□□□ -0.89
VPS28-204ENST00000526054 LYARQ9NX58 379 aaKnown RBP9.5□□□□□ -0.89
VPS28-204ENST00000526054 PLA2G3Q9NZ20 509 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 PHF11Q9UIL8 331 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 ADAM29Q9UKF5 820 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 ENTPD4Q9Y227 616 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 MMACHCQ9Y4U1 282 aa9.5□□□□□ -0.89
VPS28-204ENST00000526054 LOC102723996A0A087X1L8 192 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 A0A0A6YYD5 115 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 SERTM1A2A2V5 107 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 SYNDIG1LA6NDD5 238 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 PRSS44E7EML9 344 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 CLDN4O14493 209 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 B4GALT2O60909 372 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 DNAJB6O75190 326 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 CHRNGP07510 517 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 BGNP21810 368 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 CPN2P22792 545 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 TLX1P31314 330 aaPredicted RBP9.49□□□□□ -0.89
VPS28-204ENST00000526054 BSGP35613 385 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 FOXA1P55317 472 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 SLAMF1Q13291 335 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 ABRAXAS2Q15018 415 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 PCOLCEQ15113 449 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 SPIN4Q56A73 249 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 SH2D4BQ5SQS7 431 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 KANK2Q63ZY3 851 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 ZNF324BQ6AW86 544 aaPredicted RBP9.49□□□□□ -0.89
VPS28-204ENST00000526054 CLEC6AQ6EIG7 209 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 ZNF595Q8IYB9 648 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 KIRREL3Q8IZU9 778 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 CLYBLQ8N0X4 340 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 METTL4Q8N3J2 472 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 FAM47BQ8NA70 645 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 PLPP5Q8NEB5 264 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 OR6Y1Q8NGX8 325 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 SUN3Q8TAQ9 357 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 TAAR6Q96RI8 345 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 SORBS1Q9BX66 1292 aaKnown RBP9.49□□□□□ -0.89
VPS28-204ENST00000526054 ZNF717Q9BY31 904 aaPredicted RBP9.49□□□□□ -0.89
VPS28-204ENST00000526054 MRPL1Q9BYD6 325 aaKnown RBP9.49□□□□□ -0.89
VPS28-204ENST00000526054 ACPTQ9BZG2 426 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 ZNF700Q9H0M5 742 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 DDX31Q9H8H2 851 aaKnown RBP9.49□□□□□ -0.89
VPS28-204ENST00000526054 WDR41Q9HAD4 459 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 PRDM9Q9NQV7 894 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 PRTFDC1Q9NRG1 225 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 LANCL2Q9NS86 450 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 MS4A12Q9NXJ0 267 aa9.49□□□□□ -0.89
VPS28-204ENST00000526054 VPS29Q9UBQ0 182 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms