RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, human

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-215	ENST00000522963	SDR39U1	Q9NRG7	319 aa	Predicted RBP	11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	LANCL2	Q9NS86	450 aa		11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	MS4A12	Q9NXJ0	267 aa		11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	ZNF282	Q9UDV7	671 aa	Predicted RBP	11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	TCFL5	Q9UL49	500 aa		11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	PADI2	Q9Y2J8	665 aa		11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	WBP11	Q9Y2W2	641 aa	Known RBP	11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	PCDHGA6	Q9Y5G7	932 aa		11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	PCDHA9	Q9Y5H5	950 aa		11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	SPACA6	W5XKT8	324 aa		11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	WDFY3	Q8IZQ1	3526 aa		11.22	□□□□□ -0.61
PVT1-215	ENST00000522963	OR2W5	A6NFC9	320 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	GLOD5	A6NK44	160 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	VSTM2B	A6NLU5	285 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	ERVH48-1	M5A8F1	160 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	PSMD12	O00232	456 aa	Predicted RBP	11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	FCHO1	O14526	889 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	B4GALT2	O60909	372 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	CDC123	O75794	336 aa	Predicted RBP	11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	ALB	P02768	609 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	FH	P07954	510 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	DRD2	P14416	443 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	CD1E	P15812	388 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	DDC	P20711	480 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	BUD31	P41223	144 aa	Predicted RBP	11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	FOLR3	P41439	243 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	ALDH9A1	P49189	494 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	C21orf58	P58505	322 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	STX1B	P61266	288 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	IL10RA	Q13651	578 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	UBAP2L	Q14157	1087 aa	Known RBP	11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	HEPACAM	Q14CZ8	416 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	NKG7	Q16617	165 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	PRSS53	Q2L4Q9	553 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	ANKRD26P1	Q6NSI1	321 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	MRPL14	Q6P1L8	145 aa	Known RBP	11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	BORA	Q6PGQ7	559 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	PAOX	Q6QHF9	649 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	MED25	Q71SY5	747 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	MTDH	Q86UE4	582 aa	Known RBP	11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	TICAM1	Q8IUC6	712 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	TMEM151B	Q8IW70	566 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	RIMKLA	Q8IXN7	391 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	MIER2	Q8N344	545 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	ANKS4B	Q8N8V4	417 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	OR9I1	Q8NGQ6	314 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	STT3B	Q8TCJ2	826 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	TTC9	Q92623	222 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	FKBP10	Q96AY3	582 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	OR1F2P	Q96R84	312 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	DPY30	Q9C005	99 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	TGIF2	Q9GZN2	237 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	SLC26A1	Q9H2B4	701 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	REEP4	Q9H6H4	257 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	RPF2	Q9H7B2	306 aa	Known RBP	11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	ZIM2	Q9NZV7	527 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	C5AR2	Q9P296	337 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	CES1P1	Q9UKY3	287 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	POLH	Q9Y253	713 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	MAN2B2	Q9Y2E5	1009 aa		11.21	□□□□□ -0.61
PVT1-215	ENST00000522963	MED13	Q9UHV7	2174 aa		11.21	□□□□□ -0.62
PVT1-215	ENST00000522963	C1orf226	A1L170	272 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	GABRR3	A8MPY1	467 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963		C9JVG2	144 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	SCAMP2	O15127	329 aa	Known RBP	11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	PRMT3	O60678	531 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	SLC22A3	O75751	556 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	ZGLP1	P0C6A0	271 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	FAM87A	P0C7U9	286 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	PCSK2	P16519	638 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	PRPS1L1	P21108	318 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	IL10	P22301	178 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	JAK1	P23458	1154 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	TLX1	P31314	330 aa	Predicted RBP	11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	ZFP36L2	P47974	494 aa	Known RBP	11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	EFNA3	P52797	238 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	IRX1	P78414	480 aa	Predicted RBP	11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	BTG2	P78543	158 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	OCA2	Q04671	838 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	PDE7A	Q13946	482 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	UGT8	Q16880	541 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	LINC00303	Q3SY05	128 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	ZNF385B	Q569K4	471 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	SLC48A1	Q6P1K1	146 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	LAPTM4B	Q86VI4	370 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	ZNF595	Q8IYB9	648 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	FAM9C	Q8IZT9	166 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	OR7A2P	Q8NGA2	310 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	DNAJB14	Q8TBM8	379 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	MIEF2	Q96C03	454 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	BBC3	Q96PG8	261 aa	Predicted RBP	11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	SPSB2	Q99619	263 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	MYLK2	Q9H1R3	596 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	CLMP	Q9H6B4	373 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	SOX17	Q9H6I2	414 aa	Predicted RBP	11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	WDR41	Q9HAD4	459 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	PRTFDC1	Q9NRG1	225 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	C14orf105	Q9NVL8	296 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	ARMCX1	Q9P291	453 aa		11.2	□□□□□ -0.62
PVT1-215	ENST00000522963	ATP6V1H	Q9UI12	483 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms