RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 CLCA3PQ9Y6N3 262 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 TLX3O43711 291 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 LATS1O95835 1130 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ITGA3P26006 1051 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 GTDC1Q4AE62 458 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 SNX29P2Q8IUI4 249 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 FRS2Q8WU20 508 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 TBL1XR1Q9BZK7 514 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 EXO5Q9H790 373 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 SPHK2Q9NRA0 654 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ENAMQ9NRM1 1142 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 IL17CQ9P0M4 197 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 HSPB11Q9Y547 144 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 NME7Q9Y5B8 376 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 PCDHB14Q9Y5E9 798 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 AGXTP21549 392 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 FSHRP23945 695 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 PRDX3P30048 256 aaKnown RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 GDI1P31150 447 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 CDKN1CP49918 316 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 APLP1P51693 650 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 TBPL1P62380 186 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 MC1RQ01726 317 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 SPCS2Q15005 226 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 ZNF648Q5T619 568 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 GPALPP1Q8IXQ4 340 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 CLECL1Q8IZS7 167 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 ZNF527Q8NB42 609 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 HUS1BQ8NHY5 278 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 SLC25A36Q96CQ1 311 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 CPNE5Q9HCH3 593 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 DCAF13Q9NV06 445 aaKnown RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 PCDHGB6Q9Y5F9 930 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 DOCK1Q14185 1865 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 EIF3FO00303 357 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 KIAA0513O60268 411 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 CXCR1P25024 350 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 CD40LGP29965 261 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 GALNT10Q86SR1 603 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 OR51G2Q8NGK0 314 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 NETO1Q8TDF5 533 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 TRIB2Q92519 343 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 MOAP1Q96BY2 351 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 CCDC115Q96NT0 180 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 FUZQ9BT04 418 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 ELOVL2Q9NXB9 296 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 PCDHGA8Q9Y5G5 932 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 HHLA1C9JL84 531 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 MITFO75030 526 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 S100A6P06703 90 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 ALPPL2P10696 532 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 C4orf46Q504U0 113 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 LDLRAD1Q5T700 205 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 ZNF776Q68DI1 518 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 SDR16C5Q8N3Y7 309 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 DNAJA4Q8WW22 397 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 DGAT2Q96PD7 388 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 POLMQ9NP87 494 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 NDRG2Q9UN36 371 aaKnown RBP13.23□□□□□ -0.29
SYNPO-205ENST00000522122 TAF1LQ8IZX4 1826 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 DRGXA6NNA5 263 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 INMT-MINDY4F8WBC2 141 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 SEC14L2O76054 403 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 FAM189BP81408 668 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 PNCKQ6P2M8 343 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 C6orf120Q7Z4R8 191 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 NEIL3Q8TAT5 605 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 ARRDC2Q8TBH0 407 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 CCDC107Q8WV48 283 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 ABCG4Q9H172 646 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 BACE2Q9Y5Z0 518 aa13.23□□□□□ -0.29
SYNPO-205ENST00000522122 DBIP07108 87 aaKnown RBP13.22□□□□□ -0.29
SYNPO-205ENST00000522122 LAMP1P11279 417 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 ETFAP13804 333 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 SLC6A6P31641 620 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 SPINT3P49223 89 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 NCS1P62166 190 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 ZNF234Q14588 700 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 CCBE1Q6UXH8 406 aaPredicted RBP13.22□□□□□ -0.29
SYNPO-205ENST00000522122 PSD4Q8NDX1 1056 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 RELTQ969Z4 430 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 SCRN2Q96FV2 425 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 C14orf119Q9NWQ9 140 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 STOMP27105 288 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 ADARB1P78563 741 aaKnown RBP13.22□□□□□ -0.29
SYNPO-205ENST00000522122 IRF5Q13568 498 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 APCDD1Q8J025 514 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 TTC9BQ8N6N2 239 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 TM9SF2Q99805 663 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 SLC12A9Q9BXP2 914 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 CST11Q9H112 138 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 SCAMP2O15127 329 aaKnown RBP13.22□□□□□ -0.29
SYNPO-205ENST00000522122 TRIM3O75382 744 aaPredicted RBP13.22□□□□□ -0.29
SYNPO-205ENST00000522122 APOL3O95236 402 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 PTTG1O95997 202 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 RPS3P23396 243 aaKnown RBP eCLIP13.22□□□□□ -0.29
SYNPO-205ENST00000522122 GPM6BQ13491 265 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 TBRG1Q3YBR2 411 aa13.22□□□□□ -0.29
SYNPO-205ENST00000522122 PAPD5Q8NDF8 572 aaKnown RBP13.22□□□□□ -0.29
SYNPO-205ENST00000522122 PROKR1Q8TCW9 393 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms