RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 LCKP06239 509 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 THRBP10828 461 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 HGFP14210 728 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 SLC2A4P14672 509 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 EFNA1P20827 205 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 CD9P21926 228 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ARL4DP49703 201 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 CCT8P50990 548 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 SMSP52788 366 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 MAPK12P53778 367 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 P2RX3P56373 397 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ERVPABLB-1P60509 514 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 DBPQ10586 325 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 SLBPQ14493 270 aaKnown RBP eCLIP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 MAPRE2Q15555 327 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 HLA-BQ31612 363 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 AGAP7PQ5VUJ5 663 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 PMS2CLQ68D20 193 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 PPP4R4Q6NUP7 873 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ZNF773Q6PK81 442 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 DGLUCYQ7Z3D6 616 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 GKN2Q86XP6 184 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 P3H2Q8IVL5 708 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ZNF548Q8NEK5 533 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 CADM4Q8NFZ8 388 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ZNF420Q8TAQ5 688 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 TWIST2Q8WVJ9 160 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 TRIM63Q969Q1 353 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 TMBIM1Q969X1 311 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 FAM162AQ96A26 154 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 NEDD4LQ96PU5 975 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 EBPLQ9BY08 206 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 SLC32A1Q9H598 525 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 NARFLQ9H6Q4 476 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 SLAMF7Q9NQ25 335 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 NCDNQ9UBB6 729 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ZNF490Q9ULM2 529 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 MRPS7Q9Y2R9 242 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 YARS2Q9Y2Z4 477 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 TNPO3Q9Y5L0 923 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ADAMTS9Q9P2N4 1935 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 CDK2AP1O14519 115 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 PSIP1O75475 530 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 B3GALNT1O75752 331 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 CST1P01037 141 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 MPC1LP0DKB6 136 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 UBL4AP11441 157 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 SSTR4P31391 388 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 NFKB2Q00653 900 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 LIPEQ05469 1076 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ADPRMQ3LIE5 342 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 AASDHQ4L235 1098 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 NAGSQ8N159 534 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 FNDC5Q8NAU1 212 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 LSM14AQ8ND56 463 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ZCCHC10Q8TBK6 192 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 RSC1A1Q92681 617 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 TRNT1Q96Q11 434 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 TIMM29Q9BSF4 260 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 SLC25A23Q9BV35 468 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 RHBGQ9H310 441 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 RMND5AQ9H871 391 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 STARD5Q9NSY2 213 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 SLAMF8Q9P0V8 285 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 PLXNB3Q9ULL4 1909 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 PIPSLA2A3N6 862 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 CCDC182A6NF36 153 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 TARM1B6A8C7 271 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 hCG_2039718K7EN88 272 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 NME4O00746 187 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 MITFO75030 526 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 PEX14O75381 377 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SEC22BO75396 215 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 KCNK2O95069 426 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 OTCP00480 354 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 MPLP40238 635 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SLC26A3P40879 764 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 RPL38P63173 70 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 CBLBQ13191 982 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 IL18R1Q13478 541 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 GPR68Q15743 365 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 FAM180BQ6P0A1 224 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SYT12Q8IV01 421 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SPARTQ8N0X7 666 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 LSMEM2Q8N112 164 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 OR5K2Q8NHB8 316 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 S100ZQ8WXG8 99 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 GTF2H4Q92759 462 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ELF4Q99607 663 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 NUSAP1Q9BXS6 441 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 DSN1Q9H410 356 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ATXN7L1Q9ULK2 861 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 PADI4Q9UM07 663 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 OTOGLQ3ZCN5 2332 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 WWP2O00308 870 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 E2F3O00716 465 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 AKR7A2O43488 359 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ULK1O75385 1050 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 B3GALT4O96024 378 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 HOXB3P14651 431 aaPredicted RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms