RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZNF497Q6ZNH5 498 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 KCNMB4Q86W47 210 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 WDR49Q8IV35 697 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 GVQW1Q8N7I0 195 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 LEMD2Q8NC56 503 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 TMEM185AQ8NFB2 350 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 KIAA1524Q8TCG1 905 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 LRRC15Q8TF66 581 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 SLC13A3Q8WWT9 602 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 MRPL24Q96A35 216 aaKnown RBP3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 RAB39BQ96DA2 213 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 ZNF599Q96NL3 588 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 PKP2Q99959 881 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 KRTAP2-2Q9BYT5 123 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 WDR41Q9HAD4 459 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 SYTL2Q9HCH5 934 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 NDUFA13Q9P0J0 144 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 KCNN3Q9UGI6 736 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 FAM153AQ9UHL3 310 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 NARFQ9UHQ1 456 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 MUTYHQ9UIF7 546 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 NIP7Q9Y221 180 aaKnown RBP eCLIP3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 PRSS21Q9Y6M0 314 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 WDR81Q562E7 1941 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ARHGEF33A8MVX0 844 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 FBP2O00757 339 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ZNF749O43361 778 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 NME2P1O60361 137 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 SNAP91O60641 907 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 SEC22BO75396 215 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ANXA9O76027 345 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ALPPP05187 535 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 APRTP07741 180 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 FHP07954 510 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 CCDC192P0DO97 292 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ALPPL2P10696 532 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 CAPGP40121 348 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ID1P41134 155 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 TNFRSF4P43489 277 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 LIMK2P53671 638 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 PEX3P56589 373 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 STARD6P59095 220 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 SSTP61278 116 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 RPL27P61353 136 aaKnown RBP3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 RPS27AP62979 156 aaKnown RBP3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 CDKL1Q00532 357 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 PDK1Q15118 436 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 P2RY14Q15391 338 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 GPAT3Q53EU6 434 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 DDI2Q5TDH0 399 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 HIST2H2AA3Q6FI13 130 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 DOK6Q6PKX4 331 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 Q6ZRG5 221 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 MCM10Q7L590 875 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ADAMTSL2Q86TH1 951 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 FAM131BQ86XD5 332 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 PARP8Q8N3A8 854 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 OR52E1Q8NGJ3 308 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ESAMQ96AP7 390 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 RUNDC3BQ96NL0 473 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ANKRD27Q96NW4 1050 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 TNFRSF13CQ96RJ3 184 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ZNF577Q9BSK1 485 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 LRRC61Q9BV99 259 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 TRIM15Q9C019 465 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 XPO4Q9C0E2 1151 aaKnown RBP3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 STRADBQ9C0K7 418 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 CXXC4Q9H2H0 198 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 HOMER3Q9NSC5 361 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 THYN1Q9P016 225 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 ERVK-18Q9QC07 812 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 COPS7AQ9UBW8 275 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 DNPEPQ9ULA0 475 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 CCPG1Q9ULG6 757 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 DIMT1Q9UNQ2 313 aaKnown RBP3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 RPGRIP1LQ68CZ1 1315 aa3.36□□□□□ -1.87
HMGB1P28-201ENST00000507778 IGLV4-3A0A075B6K6 122 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 A0A0J9YWU9 116 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 IGLON5A6NGN9 336 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 A8MXK9 166 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 PDHXO00330 501 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 NTN3O00634 580 aaPredicted RBP3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 SORBS2O94875 1100 aaKnown RBP3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 REC8O95072 547 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 POP4O95707 220 aaKnown RBP3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 PGK2P07205 417 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 HIST1H2AGP0C0S8 130 aaPredicted RBP3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 ZNF883P0CG24 379 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 MBL2P11226 248 aaPredicted RBP3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 OXTRP30559 389 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 ACADSBP45954 432 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 SLC1A6P48664 564 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 NDUFV3P56181 108 aaKnown RBP3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 SRPXP78539 464 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 FASTKQ14296 549 aaKnown RBP3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 EXOSC7Q15024 291 aaKnown RBP3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 CARTPTQ16568 116 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 CCDC40Q4G0X9 1142 aa3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 HERC4Q5GLZ8 1057 aaPredicted RBP3.35□□□□□ -1.87
HMGB1P28-201ENST00000507778 TEX35Q5T0J7 233 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms