RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 LIME1Q9H400 295 aa2.54□□□□□ -2
SMC4-227ENST00000497984 TUFT1Q9NNX1 390 aa2.54□□□□□ -2
SMC4-227ENST00000497984 AMBNQ9NP70 447 aa2.54□□□□□ -2
SMC4-227ENST00000497984 LEF1Q9UJU2 399 aaPredicted RBP2.54□□□□□ -2
SMC4-227ENST00000497984 SH3GLB1Q9Y371 365 aa2.54□□□□□ -2
SMC4-227ENST00000497984 ARID1AO14497 2285 aa2.53□□□□□ -2
SMC4-227ENST00000497984 KLF18A0A0U1RQI7 1052 aa2.53□□□□□ -2
SMC4-227ENST00000497984 TEX48A0A1B0GUV7 120 aa2.53□□□□□ -2
SMC4-227ENST00000497984 FAM149AA5PLN7 773 aa2.53□□□□□ -2
SMC4-227ENST00000497984 KRTAP4-16G5E9R7 235 aaPredicted RBP2.53□□□□□ -2
SMC4-227ENST00000497984 FHP07954 510 aa2.53□□□□□ -2
SMC4-227ENST00000497984 FOSL2P15408 326 aa2.53□□□□□ -2
SMC4-227ENST00000497984 ELK1P19419 428 aa2.53□□□□□ -2
SMC4-227ENST00000497984 RBP5P82980 135 aa2.53□□□□□ -2
SMC4-227ENST00000497984 BFSP1Q12934 665 aa2.53□□□□□ -2
SMC4-227ENST00000497984 PTK6Q13882 451 aa2.53□□□□□ -2
SMC4-227ENST00000497984 MEF2DQ14814 521 aa2.53□□□□□ -2
SMC4-227ENST00000497984 C17orf58Q2M2W7 97 aa2.53□□□□□ -2
SMC4-227ENST00000497984 C1orf189Q5VU69 101 aa2.53□□□□□ -2
SMC4-227ENST00000497984 LYPLAL1Q5VWZ2 237 aa2.53□□□□□ -2
SMC4-227ENST00000497984 WSCD1Q658N2 575 aa2.53□□□□□ -2
SMC4-227ENST00000497984 KLHL7Q8IXQ5 586 aa2.53□□□□□ -2
SMC4-227ENST00000497984 KLHDC8AQ8IYD2 350 aa2.53□□□□□ -2
SMC4-227ENST00000497984 SIX6OS1Q8N1H7 587 aa2.53□□□□□ -2
SMC4-227ENST00000497984 SAMD12Q8N8I0 201 aa2.53□□□□□ -2
SMC4-227ENST00000497984 NHLRC2Q8NBF2 726 aa2.53□□□□□ -2
SMC4-227ENST00000497984 ATAD1Q8NBU5 361 aa2.53□□□□□ -2
SMC4-227ENST00000497984 KIAA0895Q8NCT3 520 aa2.53□□□□□ -2
SMC4-227ENST00000497984 OR6T1Q8NGN1 323 aa2.53□□□□□ -2
SMC4-227ENST00000497984 GOLGA5Q8TBA6 731 aa2.53□□□□□ -2
SMC4-227ENST00000497984 TCP11Q8WWU5 503 aa2.53□□□□□ -2
SMC4-227ENST00000497984 MR1Q95460 341 aa2.53□□□□□ -2
SMC4-227ENST00000497984 NTNG2Q96CW9 530 aa2.53□□□□□ -2
SMC4-227ENST00000497984 PARK7Q99497 189 aaKnown RBP2.53□□□□□ -2
SMC4-227ENST00000497984 CITED2Q99967 270 aaPredicted RBP2.53□□□□□ -2
SMC4-227ENST00000497984 ZBP1Q9H171 429 aa2.53□□□□□ -2
SMC4-227ENST00000497984 ZNF665Q9H7R5 613 aa2.53□□□□□ -2
SMC4-227ENST00000497984 ADAM22Q9P0K1 906 aa2.53□□□□□ -2
SMC4-227ENST00000497984 DHRS4-AS1Q9P1J3 65 aa2.53□□□□□ -2
SMC4-227ENST00000497984 ZNF346Q9UL40 294 aaKnown RBP2.53□□□□□ -2
SMC4-227ENST00000497984 A0A087X0K7 114 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 ATP6AP2A0A1C7CYW4 349 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 RNF212BA8MTL3 300 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 ST8SIA3O43173 380 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 SYT7O43581 403 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 HSPA4LO95757 839 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 PIGRP01833 764 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 LYNP07948 512 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 C8orf89P0DMQ9 161 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 ODC1P11926 461 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 RGRP47804 291 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 ACKR1Q16570 336 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 ZNF789Q5FWF6 425 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 MPP7Q5T2T1 576 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 IGFL2Q6UWQ7 119 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 ZNF730Q6ZMV8 503 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 VSIG1Q86XK7 387 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 UXS1Q8NBZ7 420 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 GPR148Q8TDV2 347 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 RBM18Q96H35 190 aaKnown RBP2.52□□□□□ -2.01
SMC4-227ENST00000497984 ERGIC2Q96RQ1 377 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 RAB40CQ96S21 281 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 THUMPD3Q9BV44 507 aaKnown RBP2.52□□□□□ -2.01
SMC4-227ENST00000497984 DPEP3Q9H4B8 488 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 ZDHHC6Q9H6R6 413 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 NT5DC2Q9H857 520 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 SRD5A3Q9H8P0 318 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 FBXO7Q9Y3I1 522 aa2.52□□□□□ -2.01
SMC4-227ENST00000497984 ZNF487B1APH4 448 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 NEDD8-MDP1E9PL57 170 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 B4GAT1O43505 415 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 KIAA0513O60268 411 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 SRPX2O60687 465 aaPredicted RBP2.51□□□□□ -2.01
SMC4-227ENST00000497984 ATP9AO75110 1047 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 OR6A2O95222 327 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 IGKV3-11P04433 115 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 PROS1P07225 676 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 GSTA2P09210 222 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 OR9G9P0C7N8 305 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 GLRA1P23415 457 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 FASP25445 335 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 SLC34A1Q06495 639 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 GABPAQ06546 454 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 NFE2L1Q14494 772 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 LRRC38Q5VT99 294 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 SNRNP48Q6IEG0 339 aaKnown RBP2.51□□□□□ -2.01
SMC4-227ENST00000497984 CAPN13Q6MZZ7 669 aaPredicted RBP2.51□□□□□ -2.01
SMC4-227ENST00000497984 CCDC71Q8IV32 467 aaPredicted RBP2.51□□□□□ -2.01
SMC4-227ENST00000497984 OR7G3Q8NG95 312 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 GTSF1Q8WW33 167 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 ZBED6CLQ96FA7 236 aaPredicted RBP2.51□□□□□ -2.01
SMC4-227ENST00000497984 SPATA17Q96L03 361 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 SSX3Q99909 188 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 NUSAP1Q9BXS6 441 aaKnown RBP2.51□□□□□ -2.01
SMC4-227ENST00000497984 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.51□□□□□ -2.01
SMC4-227ENST00000497984 TMEM161AQ9NX61 479 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 PLEK2Q9NYT0 353 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 CIDEBQ9UHD4 219 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 FBXL5Q9UKA1 691 aa2.51□□□□□ -2.01
SMC4-227ENST00000497984 EXOC6BQ9Y2D4 811 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms