RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 GALNT8Q9NY28 637 aa15.11■□□□□ 0.01
VIM-208ENST00000497849 COMMD10Q9Y6G5 202 aa15.11■□□□□ 0.01
VIM-208ENST00000497849 HEATR5AQ86XA9 2040 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 MED12Q93074 2177 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 CD8B2A6NJW9 211 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 C17orf105B2RV13 164 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 CYR61O00622 381 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 SIAH2O43255 324 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 HAUS5O94927 633 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 HIST1H2AGP0C0S8 130 aaPredicted RBP15.1■□□□□ 0.01
VIM-208ENST00000497849 HIST1H2ADP20671 130 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 HNRNPH1P31943 449 aaKnown RBP15.1■□□□□ 0.01
VIM-208ENST00000497849 DHX34Q14147 1143 aaKnown RBP15.1■□□□□ 0.01
VIM-208ENST00000497849 RBBP5Q15291 538 aaKnown RBP15.1■□□□□ 0.01
VIM-208ENST00000497849 HMBOX1Q6NT76 420 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 PALM2Q8IXS6 379 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 GAL3ST3Q96A11 431 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 FAR2Q96K12 515 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 HIST1H2AHQ96KK5 128 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 QRFPRQ96P65 431 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 TRIB1Q96RU8 372 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 HIST1H2AJQ99878 128 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 H2AFJQ9BTM1 129 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 ALOXE3Q9BYJ1 711 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 PELI2Q9HAT8 420 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 ARL15Q9NXU5 204 aa15.1■□□□□ 0.01
VIM-208ENST00000497849 C6orf203Q9P0P8 240 aaPredicted RBP15.1■□□□□ 0.01
VIM-208ENST00000497849 TRMT6Q9UJA5 497 aaKnown RBP15.1■□□□□ 0.01
VIM-208ENST00000497849 EIF3LQ9Y262 564 aaKnown RBP15.1■□□□□ 0.01
VIM-208ENST00000497849 ZCWPW2A0A1B0GU75 182 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 CCDC188H7C350 402 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 CTNSO60931 367 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 ETHE1O95571 254 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 TPSB2P20231 275 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 SAT1P21673 171 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 FNTAP49354 379 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 FOXF2Q12947 444 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 THOC5Q13769 683 aaKnown RBP15.09■□□□□ 0.01
VIM-208ENST00000497849 TPSAB1Q15661 275 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 ACKR1Q16570 336 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 VASNQ6EMK4 673 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 PAQR3Q6TCH7 311 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 MYO1HQ8N1T3 1032 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 C9orf106Q8NAJ2 232 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 ZNF721Q8TF20 911 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 ZNF669Q96BR6 464 aaPredicted RBP15.09■□□□□ 0.01
VIM-208ENST00000497849 MS4A6EQ96DS6 147 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 SPACA9Q96E40 222 aaPredicted RBP15.09■□□□□ 0.01
VIM-208ENST00000497849 JSRP1Q96MG2 331 aaPredicted RBP15.09■□□□□ 0.01
VIM-208ENST00000497849 CCL19Q99731 98 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 AIF1LQ9BQI0 150 aa15.09■□□□□ 0.01
VIM-208ENST00000497849 MRPS33Q9Y291 106 aaKnown RBP15.09■□□□□ 0.01
VIM-208ENST00000497849 CHCHD2Q9Y6H1 151 aaPredicted RBP15.09■□□□□ 0.01
VIM-208ENST00000497849 SYNDIG1LA6NDD5 238 aa15.08■□□□□ 0
VIM-208ENST00000497849 CASKO14936 926 aa15.08■□□□□ 0
VIM-208ENST00000497849 ERI3O43414 337 aaKnown RBP15.08■□□□□ 0
VIM-208ENST00000497849 LRATO95237 230 aa15.08■□□□□ 0
VIM-208ENST00000497849 C1QAP02745 245 aa15.08■□□□□ 0
VIM-208ENST00000497849 TNNI3P19429 210 aa15.08■□□□□ 0
VIM-208ENST00000497849 GDF1P27539 372 aa15.08■□□□□ 0
VIM-208ENST00000497849 RGS4P49798 205 aa15.08■□□□□ 0
VIM-208ENST00000497849 LIM2P55344 173 aa15.08■□□□□ 0
VIM-208ENST00000497849 STXBP1P61764 594 aaKnown RBP15.08■□□□□ 0
VIM-208ENST00000497849 CKAP4Q07065 602 aaKnown RBP15.08■□□□□ 0
VIM-208ENST00000497849 GPS1Q13098 491 aa15.08■□□□□ 0
VIM-208ENST00000497849 CASC4Q6P4E1 433 aa15.08■□□□□ 0
VIM-208ENST00000497849 NXPE4Q6UWF7 544 aa15.08■□□□□ 0
VIM-208ENST00000497849 TMPRSS11BQ86T26 416 aa15.08■□□□□ 0
VIM-208ENST00000497849 LUZP2Q86TE4 346 aa15.08■□□□□ 0
VIM-208ENST00000497849 PM20D2Q8IYS1 436 aa15.08■□□□□ 0
VIM-208ENST00000497849 CEP112Q8N8E3 955 aa15.08■□□□□ 0
VIM-208ENST00000497849 OR10G3Q8NGC4 313 aa15.08■□□□□ 0
VIM-208ENST00000497849 NUBPLQ8TB37 319 aa15.08■□□□□ 0
VIM-208ENST00000497849 FBXL8Q96CD0 374 aa15.08■□□□□ 0
VIM-208ENST00000497849 LINGO1Q96FE5 620 aa15.08■□□□□ 0
VIM-208ENST00000497849 NDNQ99608 321 aa15.08■□□□□ 0
VIM-208ENST00000497849 CNOT11Q9UKZ1 510 aaKnown RBP15.08■□□□□ 0
VIM-208ENST00000497849 DAPP1Q9UN19 280 aa15.08■□□□□ 0
VIM-208ENST00000497849 CAMK2AQ9UQM7 478 aa15.08■□□□□ 0
VIM-208ENST00000497849 TESMINQ9Y4I5 508 aa15.08■□□□□ 0
VIM-208ENST00000497849 MED12LQ86YW9 2145 aa15.08■□□□□ 0
VIM-208ENST00000497849 ROS1P08922 2347 aa15.08■□□□□ 0
VIM-208ENST00000497849 USF3Q68DE3 2245 aa15.07■□□□□ 0
VIM-208ENST00000497849 LRIT2A6NDA9 550 aa15.07■□□□□ 0
VIM-208ENST00000497849 DEFB108AA8MXU0 73 aa15.07■□□□□ 0
VIM-208ENST00000497849 B3GALT2O43825 422 aa15.07■□□□□ 0
VIM-208ENST00000497849 TBX6O95947 436 aaPredicted RBP15.07■□□□□ 0
VIM-208ENST00000497849 TMIGD3P0DMS9 266 aaPredicted RBP15.07■□□□□ 0
VIM-208ENST00000497849 NID1P14543 1247 aa15.07■□□□□ 0
VIM-208ENST00000497849 FPR1P21462 350 aa15.07■□□□□ 0
VIM-208ENST00000497849 SLCO1A2P46721 670 aa15.07■□□□□ 0
VIM-208ENST00000497849 AP1S2P56377 157 aa15.07■□□□□ 0
VIM-208ENST00000497849 CDK16Q00536 496 aa15.07■□□□□ 0
VIM-208ENST00000497849 DR1Q01658 176 aa15.07■□□□□ 0
VIM-208ENST00000497849 TBL3Q12788 808 aaKnown RBP15.07■□□□□ 0
VIM-208ENST00000497849 STX4Q12846 297 aa15.07■□□□□ 0
VIM-208ENST00000497849 SF3B4Q15427 424 aaKnown RBP eCLIP15.07■□□□□ 0
VIM-208ENST00000497849 PPP1R7Q15435 360 aa15.07■□□□□ 0
VIM-208ENST00000497849 DCST1Q5T197 706 aa15.07■□□□□ 0
VIM-208ENST00000497849 ARMC3Q5W041 872 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms