RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 RAB43Q86YS6 212 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 TICAM1Q8IUC6 712 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 SCUBE1Q8IWY4 988 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 PLPP5Q8NEB5 264 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 CEP70Q8NHQ1 597 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 DNAJB14Q8TBM8 379 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 TANKQ92844 425 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 EXOSC8Q96B26 276 aaKnown RBP11.17□□□□□ -0.62
CUX1-210ENST00000497815 ANKRD9Q96BM1 317 aaPredicted RBP11.17□□□□□ -0.62
CUX1-210ENST00000497815 KLHL29Q96CT2 875 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 CNTNAP3BQ96NU0 1288 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 CNTNAP3Q9BZ76 1288 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 PNO1Q9NRX1 252 aaKnown RBP11.17□□□□□ -0.62
CUX1-210ENST00000497815 ZMIZ1Q9ULJ6 1067 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 EXO1Q9UQ84 846 aaKnown RBP11.17□□□□□ -0.62
CUX1-210ENST00000497815 MMACHCQ9Y4U1 282 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 HS3ST3B1Q9Y662 390 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 ASPMQ8IZT6 3477 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 A0A087WV48 116 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 IGKV3D-11A0A0A0MRZ8 115 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 A0A1W2PS29 197 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 GMNCA6NCL1 334 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 MASP2O00187 686 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 PEX12O00623 359 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 SOCS6O14544 535 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 UBDO15205 165 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 SEC24DO94855 1032 aaPredicted RBP11.16□□□□□ -0.62
CUX1-210ENST00000497815 GPR75O95800 540 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 IFNA16P05015 189 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 DRD2P14416 443 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 ACPPP15309 386 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 DDCP20711 480 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 PIK3R1P27986 724 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 GSTM5P46439 218 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 ASMTP46597 345 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 ARFIP2P53365 341 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 OR4D2P58180 307 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 CDC20Q12834 499 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 ATP1A4Q13733 1029 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 RPS6KA2Q15349 733 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 SFT2D3Q587I9 215 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 OGFOD2Q6N063 350 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 KIRREL2Q6UWL6 708 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 MED25Q71SY5 747 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 CPLX4Q7Z7G2 160 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 MRGPREQ86SM8 312 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 KRTCAP2Q8N6L1 136 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 OR4K14Q8NGD5 310 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.16□□□□□ -0.62
CUX1-210ENST00000497815 ADAMTS17Q8TE56 1095 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 DOK4Q8TEW6 326 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 NUDT8Q8WV74 236 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 PPWD1Q96BP3 646 aaKnown RBP11.16□□□□□ -0.62
CUX1-210ENST00000497815 PPCDCQ96CD2 204 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 CATSPER2Q96P56 530 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 SIKE1Q9BRV8 207 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 CCDC28BQ9BUN5 200 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 ALOXE3Q9BYJ1 711 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 KCNK13Q9HB14 408 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 AIG1Q9NVV5 245 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 ASIC5Q9NY37 505 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 C19orf25Q9UFG5 118 aaPredicted RBP11.16□□□□□ -0.62
CUX1-210ENST00000497815 UTS2RQ9UKP6 389 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 CES1P1Q9UKY3 287 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 PSME2Q9UL46 239 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 NUP210LQ5VU65 1888 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 CEP295Q9C0D2 2601 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 FRYQ5TBA9 3013 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 FREM2Q5SZK8 3169 aa11.16□□□□□ -0.62
CUX1-210ENST00000497815 TCRBV16S1A1N1A0A5B0 115 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 OR10H2O60403 315 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 TNNI3P19429 210 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 DRD4P21917 467 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 PTGER1P34995 402 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 HPCAL1P37235 193 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 FEN1P39748 380 aaKnown RBP11.15□□□□□ -0.62
CUX1-210ENST00000497815 XKP51811 444 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 TMPRSS3P57727 454 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 CXADRP78310 365 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 PRSS53Q2L4Q9 553 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 DEFB109BQ30KR1 87 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 TMEM205Q6UW68 189 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 CPEB2Q7Z5Q1 589 aaKnown RBP11.15□□□□□ -0.62
CUX1-210ENST00000497815 PARP9Q8IXQ6 854 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 AMER2Q8N7J2 671 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 OR7A2PQ8NGA2 310 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 OR11G2Q8NGC1 345 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 DGAT2Q96PD7 388 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 ELAC2Q9BQ52 826 aaKnown RBP11.15□□□□□ -0.62
CUX1-210ENST00000497815 DPY30Q9C005 99 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 NSRP1Q9H0G5 558 aaKnown RBP11.15□□□□□ -0.62
CUX1-210ENST00000497815 REEP4Q9H6H4 257 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 P4HTMQ9NXG6 502 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 SH3BP4Q9P0V3 963 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 KLHL14Q9P2G3 628 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 FBXL4Q9UKA2 621 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 ENTPD4Q9Y227 616 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 WBP11Q9Y2W2 641 aaKnown RBP11.15□□□□□ -0.62
CUX1-210ENST00000497815 CLDN16Q9Y5I7 305 aa11.15□□□□□ -0.62
CUX1-210ENST00000497815 ZNF780BQ9Y6R6 833 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms