RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 AMER2Q8N7J2 671 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 AQP11Q8NBQ7 271 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 RAB8BQ92930 207 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 SMAD5Q99717 465 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 PSD2Q9BQI7 771 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 BHLHE41Q9C0J9 482 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 NEK6Q9HC98 313 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 TAAR2Q9P1P5 351 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 MALT1Q9UDY8 824 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 OR1A2Q9Y585 309 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 PCDHGB6Q9Y5F9 930 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 A0A1W2PRB8 838 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 CLCA1A8K7I4 914 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 NDUFB5O43674 189 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 TBX6O95947 436 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 P2RY2P41231 377 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 RGS6P49758 472 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 LSM11P83369 360 aaKnown RBP eCLIP15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 SPANXN2Q5MJ10 180 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 FAM71E1Q6IPT2 247 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 CAMKMTQ7Z624 323 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 RBM45Q8IUH3 476 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 LAS2Q8IYD9 372 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 REPS1Q96D71 796 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 MACROD1Q9BQ69 325 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 ZCCHC2Q9C0B9 1178 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 SLAMF7Q9NQ25 335 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 ATP6V1HQ9UI12 483 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 UGT2A1Q9Y4X1 527 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 NOX1Q9Y5S8 564 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 IGLON5A6NGN9 336 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 SERPIND1P05546 499 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 CDK1P06493 297 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 CNR2P34972 360 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 MRPS15P82914 257 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 ZNF33BQ06732 778 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 C10orf62Q5T681 223 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 FAM109BQ6ICB4 259 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 PTCHD4Q6ZW05 846 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 KLHDC8AQ8IYD2 350 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 TAGAPQ8N103 731 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 SLC34A3Q8N130 599 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 DTX3Q8N9I9 347 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 ANKRD53Q8N9V6 530 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 TFGQ92734 400 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 HRASLS5Q96KN8 279 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 OR52A5Q9H2C5 316 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 CXorf36Q9H7Y0 433 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 PCDHGA3Q9Y5H0 932 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 H3BN98 237 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 H7BY64 318 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 PLPP1O14494 284 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 ZW10O43264 779 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 GPR37L1O60883 481 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 NME6O75414 186 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 CAV3P56539 151 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 CDK6Q00534 326 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 ELAVL3Q14576 367 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 PTGES3Q15185 160 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 GET4Q7L5D6 327 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 SLC46A3Q7Z3Q1 461 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 ABI3BPQ7Z7G0 1075 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 ADGRF3Q8IZF5 1079 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 OR2L2Q8NH16 312 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 GPR151Q8TDV0 419 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 CXorf40AQ8TE69 158 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 PRAP1Q96NZ9 151 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 C1GALT1Q9NS00 363 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 PCDHGB3Q9Y5G1 929 aa15.72■□□□□ 0.11
CCDC88B-210ENST00000494566 PDZK1P1A8MUH7 402 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 HOXC11O43248 304 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 GGT2P36268 569 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 HNRNPFP52597 415 aaKnown RBP15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 HSPB3Q12988 150 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 USP43Q70EL4 1123 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 AMER3Q8N944 861 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 OR52N2Q8NGI0 321 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 TBC1D20Q96BZ9 403 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 TRMT61AQ96FX7 289 aaKnown RBP15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 TRNT1Q96Q11 434 aaKnown RBP15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 MGLLQ99685 303 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 ABCB9Q9NP78 766 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 CCNB1IP1Q9NPC3 277 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 TAS2R9Q9NYW1 312 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 MUTYHQ9UIF7 546 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 EDDM13A0A1B0GTR0 161 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 GASTP01350 101 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 SDHBP21912 280 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 UBE3AQ05086 875 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 DUSP7Q16829 419 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 ERN2Q76MJ5 926 aaKnown RBP15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 GLCCI1Q86VQ1 547 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 LAX1Q8IWV1 398 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 TRIM48Q8IWZ4 208 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 HOMEZQ8IX15 550 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 MYDGFQ969H8 173 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 ITPKCQ96DU7 683 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 WFDC6Q9BQY6 131 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 HOXD1Q9GZZ0 328 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 MMP27Q9H306 513 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms