RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 NEIL2Q969S2 332 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DPCDQ9BVM2 203 aaPredicted RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 IL1RAPQ9NPH3 570 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 H7C2Y5 167 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 STX16O14662 325 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FGF19O95750 216 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PLATP00750 562 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 S100A6P06703 90 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 IDSP22304 550 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CXCR2P25025 360 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BUD31P41223 144 aaPredicted RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MAZP56270 477 aaKnown RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CSNK2BP67870 215 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FOXM1Q08050 763 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ADPRMQ3LIE5 342 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ITPRIPL2Q3MIP1 535 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PRAMEF13Q5VWM6 474 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NOXRED1Q6NXP6 359 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MZT2AQ6P582 158 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PELI3Q8N2H9 469 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MINDY1Q8N5J2 469 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HUS1BQ8NHY5 278 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DNAJA3Q96EY1 480 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 VMP1Q96GC9 406 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PKP4Q99569 1192 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ANKRA2Q9H9E1 313 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PLSCR3Q9NRY6 295 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SAMD4AQ9UPU9 718 aaKnown RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SPTA1P02549 2419 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 H0Y8X5 98 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CACNG3O60359 315 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CDC123O75794 336 aaPredicted RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CTSLP07711 333 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MAOBP27338 520 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SDC2P34741 201 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TSTQ16762 297 aaKnown RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GPAT3Q53EU6 434 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 USP39Q53GS9 565 aaKnown RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 C9orf64Q5T6V5 341 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF783Q6ZMS7 281 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 VTCN1Q7Z7D3 282 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 COMMD7Q86VX2 200 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 METTL27Q8N6F8 245 aaPredicted RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 KAT2AQ92830 837 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GTPBP3Q969Y2 492 aaKnown RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ARRDC3Q96B67 414 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SPATA9Q9BWV2 254 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF304Q9HCX3 659 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BRD7Q9NPI1 651 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AIG1Q9NVV5 245 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OARD1Q9Y530 152 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TEX51A0A1B0GUA7 166 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NR2F1P10589 423 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LAMP1P11279 417 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GPX3P22352 226 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TGM1P22735 817 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 F8A1P23610 371 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 EVI2BP34910 448 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FEN1P39748 380 aaKnown RBP10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 EIF2DP41214 584 aaKnown RBP10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BTN1A1Q13410 526 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LRRC32Q14392 662 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PUS10Q3MIT2 529 aaKnown RBP10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 KANK2Q63ZY3 851 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BLOC1S3Q6QNY0 202 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ENPP6Q6UWR7 440 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HACD2Q6Y1H2 254 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OOSP2Q86WS3 158 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PLCZ1Q86YW0 608 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TMC8Q8IU68 726 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TMEM151AQ8N4L1 468 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LSMEM1Q8N8F7 131 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GPR150Q8NGU9 434 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC9A6Q92581 669 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 L3HYPDHQ96EM0 354 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SAGE1Q9NXZ1 904 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TRPM6Q9BX84 2022 aa10.27□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 A8MUA0 341 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CHURC1-FNTBB4DL54 471 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 H3BUI4 141 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 OR7A17O14581 309 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ERI3O43414 337 aaKnown RBP10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 C6orf47O95873 294 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RPS17P08708 135 aaKnown RBP10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CST6Q15828 149 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLX4IPQ5VYV7 408 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TMIGD1Q6UXZ0 262 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FAM92BQ6ZTR7 304 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 LRRTM4Q86VH4 590 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 LACC1Q8IV20 430 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PROKR1Q8TCW9 393 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FRS2Q8WU20 508 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RIT1Q92963 219 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MUL1Q969V5 352 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NECTIN4Q96NY8 510 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NUSAP1Q9BXS6 441 aaKnown RBP10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NLNQ9BYT8 704 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ACPTQ9BZG2 426 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SOHLH2Q9NX45 425 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GLTPQ9NZD2 209 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms