RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TSACCQ96A04 125 aaPredicted RBP10.55□□□□□ -0.72
HDAC6-228ENST00000486227 C2orf74A8MZ97 194 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 IFI30P13284 250 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 NKX2-5P52952 324 aaPredicted RBP10.55□□□□□ -0.72
HDAC6-228ENST00000486227 MRPL58Q14197 206 aaKnown RBP10.55□□□□□ -0.72
HDAC6-228ENST00000486227 PUS10Q3MIT2 529 aaKnown RBP10.55□□□□□ -0.72
HDAC6-228ENST00000486227 CLEC12AQ5QGZ9 265 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 GALNT7Q86SF2 657 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 CNIH3Q8TBE1 160 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 MRPL38Q96DV4 380 aaKnown RBP10.55□□□□□ -0.72
HDAC6-228ENST00000486227 FRMD6Q96NE9 622 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 CAMK1GQ96NX5 476 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 DGAT2Q96PD7 388 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 OR51V1Q9H2C8 321 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 RIIAD1A6NNX1 92 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 FAM155AB1AL88 458 aaPredicted RBP10.55□□□□□ -0.72
HDAC6-228ENST00000486227 RFXAPO00287 272 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 DUX1O43812 170 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 IGLV3-25P01717 112 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 MT-ND2P03891 347 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 TCEA1P23193 301 aaKnown RBP10.55□□□□□ -0.72
HDAC6-228ENST00000486227 MAP2K4P45985 399 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 CLCA4Q14CN2 919 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 CATSPEREQ5SY80 951 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 ELMOD2Q8IZ81 293 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 ADGRG5Q8IZF4 528 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 UBE2J2Q8N2K1 259 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 IL22RA1Q8N6P7 574 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 OR7G3Q8NG95 312 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 OR5AR1Q8NGP9 310 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 OR2A12Q8NGT7 310 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 CPSF4LA6NMK7 179 aaKnown RBP10.55□□□□□ -0.72
HDAC6-228ENST00000486227 ARHGEF33A8MVX0 844 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 TSPAN4O14817 238 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 THEGLP0DJG4 465 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 LAMP1P11279 417 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 MATN1P21941 496 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 ITGB7P26010 798 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 XKP51811 444 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 LPAL2Q16609 132 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 IQCCQ4KMZ1 466 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 DPPA4Q7L190 304 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 GALNT10Q86SR1 603 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.55□□□□□ -0.72
HDAC6-228ENST00000486227 UXS1Q8NBZ7 420 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 ZNF354BQ96LW1 612 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 TM9SF3Q9HD45 589 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 CMTM6Q9NX76 183 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 ACSL6Q9UKU0 697 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 DOCK1Q14185 1865 aa10.55□□□□□ -0.72
HDAC6-228ENST00000486227 ANKRD31Q8N7Z5 1873 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.54□□□□□ -0.72
HDAC6-228ENST00000486227 APBB3O95704 486 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 PSKH1P11801 424 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 GPX3P22352 226 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 EIPR1Q53HC9 387 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 PIWIL3Q7Z3Z3 882 aaKnown RBP10.54□□□□□ -0.72
HDAC6-228ENST00000486227 MOSPD2Q8NHP6 518 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 SPPL3Q8TCT6 385 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 TRNT1Q96Q11 434 aaKnown RBP10.54□□□□□ -0.72
HDAC6-228ENST00000486227 SLC30A3Q99726 388 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 C12orf4Q9NQ89 552 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 MKL2Q9ULH7 1088 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 HS3ST2Q9Y278 367 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 PCDHGA2Q9Y5H1 932 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 AKR1D1P51857 326 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 MAB21L1Q13394 359 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 DEFB134Q4QY38 66 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 USP30Q70CQ3 517 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 SLC29A4Q7RTT9 530 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 LSMEM2Q8N112 164 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 OR56A1Q8NGH5 318 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 DTD2Q96FN9 168 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 CNDP2Q96KP4 475 aaKnown RBP10.54□□□□□ -0.72
HDAC6-228ENST00000486227 ALPK1Q96QP1 1244 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 KCNN2Q9H2S1 579 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 MVB12BQ9H7P6 319 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 PFDN2Q9UHV9 154 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 MAN2B2Q9Y2E5 1009 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 HSPE1-MOB4S4R3N1 261 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 COL11A2P13942 1736 aaPredicted RBP10.54□□□□□ -0.72
HDAC6-228ENST00000486227 A0A1W2PRG6 482 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 XKRYO14609 159 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 MYL9P24844 172 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 RABIFP47224 123 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 CD47Q08722 323 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 TMEM240Q5SV17 173 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 COMMD6Q7Z4G1 85 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 SPARTQ8N0X7 666 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 OR8H3Q8N146 312 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 AQP11Q8NBQ7 271 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 WBP2Q969T9 261 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 TBL1XR1Q9BZK7 514 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 POLR2J2Q9GZM3 115 aaKnown RBP10.54□□□□□ -0.72
HDAC6-228ENST00000486227 IL1RAPQ9NPH3 570 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 POFUT2Q9Y2G5 429 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 MCM3APO60318 1980 aa10.54□□□□□ -0.72
HDAC6-228ENST00000486227 UBE2QL1A1L167 161 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 OR6C74A6NCV1 312 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PCP4L1A6NKN8 68 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms