RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 CPSF6Q16630 551 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS50-218ENST00000485994 MPEG1Q2M385 716 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 FRG2Q64ET8 278 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 FCRLBQ6BAA4 426 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 SPINK14Q6IE38 97 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 Q6ZPB1 254 aaPredicted RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 MILR1Q7Z6M3 343 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 ST13P4Q8IZP2 240 aaPredicted RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 SVOPQ8N4V2 548 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 SLC15A4Q8N697 577 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 AMER2Q8N7J2 671 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 PTGR2Q8N8N7 351 aaPredicted RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 FAM98AQ8NCA5 519 aaKnown RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 LRRN4CLQ8ND94 238 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 OR5L2Q8NGL0 311 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 C16orf52Q8NHV5 167 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 ZNF483Q8TF39 744 aaPredicted RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 EXT2Q93063 718 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 ATP6V1E2Q96A05 226 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 PHF21BQ96EK2 531 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 RBM18Q96H35 190 aaKnown RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 SENP5Q96HI0 755 aaPredicted RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 C5orf34Q96MH7 638 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 FRG2BQ96QU4 278 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 CSF3RQ99062 836 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 MTERF1Q99551 399 aaKnown RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 PELOQ9BRX2 385 aaKnown RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 RBCK1Q9BYM8 510 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 EPB41L4BQ9H329 900 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 OR51B5Q9H339 312 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 RPF2Q9H7B2 306 aaKnown RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 PNO1Q9NRX1 252 aaKnown RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 NMRK1Q9NWW6 199 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 AHSPQ9NZD4 102 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 MAP10Q9P2G4 905 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 CPSF2Q9P2I0 782 aaKnown RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 MYOTQ9UBF9 498 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 ERRFI1Q9UJM3 462 aaPredicted RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 ZNF223Q9UK11 482 aaPredicted RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 RNF11Q9Y3C5 154 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 CLCA3PQ9Y6N3 262 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 NCOA6Q14686 2063 aaPredicted RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 PKDREJQ9NTG1 2253 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 ITPR2Q14571 2701 aa6.52□□□□□ -1.37
VPS50-218ENST00000485994 UTP20O75691 2785 aaKnown RBP6.52□□□□□ -1.37
VPS50-218ENST00000485994 A8MT66 165 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 A8MUA0 341 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 ESPNB1AK53 854 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 H3BQF6 201 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 KLRC4-KLRK1H3BQV0 150 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 RTCAO00442 366 aaKnown RBP6.51□□□□□ -1.37
VPS50-218ENST00000485994 GUCY1B2O75343 617 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 ITGA10O75578 1167 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 ETHE1O95571 254 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 OTCP00480 354 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 IGKV3-11P04433 115 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 IFNA16P05015 189 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 FAM153BP0C7A2 387 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 FAM58BPP0C7Q3 252 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 SLC35E2P0CK97 266 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 HSD3B1P14060 373 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 COX7A2P14406 83 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 TAC1P20366 129 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 ATP5F1P24539 256 aaPredicted RBP6.51□□□□□ -1.37
VPS50-218ENST00000485994 HSD3B2P26439 372 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 MST1P26927 711 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 BUD31P41223 144 aaPredicted RBP6.51□□□□□ -1.37
VPS50-218ENST00000485994 SSR2P43308 183 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 SSR4P51571 173 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 RAP1GDS1P52306 607 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 PER3P56645 1201 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 RPS13P62277 151 aaKnown RBP6.51□□□□□ -1.37
VPS50-218ENST00000485994 TRA2BP62995 288 aaKnown RBP6.51□□□□□ -1.37
VPS50-218ENST00000485994 HERVK_113P63132 956 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 RBPJQ06330 500 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 TBL3Q12788 808 aaKnown RBP6.51□□□□□ -1.37
VPS50-218ENST00000485994 IFT88Q13099 833 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 FAM153CQ494X1 144 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 PIGGQ5H8A4 983 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 ZNF678Q5SXM1 525 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 ZNF468Q5VIY5 522 aaPredicted RBP6.51□□□□□ -1.37
VPS50-218ENST00000485994 MTFR2Q6P444 385 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 HSDL2Q6YN16 418 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 PAGE2Q7Z2X7 111 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 SLC22A9Q8IVM8 553 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 SIAH3Q8IW03 269 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 LINC00528Q8N1L1 170 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 METTL4Q8N3J2 472 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 KIF2BQ8N4N8 673 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 FAM47BQ8NA70 645 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 ZFP62Q8NB50 900 aaPredicted RBP6.51□□□□□ -1.37
VPS50-218ENST00000485994 OR52B6Q8NGF0 335 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 NUBPLQ8TB37 319 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 ZNF721Q8TF20 911 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 MZB1Q8WU39 189 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 NCLNQ969V3 563 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 TMEM125Q96AQ2 219 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 CCDC126Q96EE4 140 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 SCYL1Q96KG9 808 aa6.51□□□□□ -1.37
VPS50-218ENST00000485994 ART5Q96L15 291 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms