RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 C5orf34Q96MH7 638 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 HBEGFQ99075 208 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ALOXE3Q9BYJ1 711 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ZNF700Q9H0M5 742 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 EPB41L4BQ9H329 900 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ENAMQ9NRM1 1142 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 OXSMQ9NWU1 459 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 VPS4AQ9UN37 437 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ERVK-11Q9UQG0 969 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 PLLPQ9Y342 182 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 CROCCQ5TZA2 2017 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 PKD1L2Q7Z442 2459 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 WDFY3Q8IZQ1 3526 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 TNRC6AQ8NDV7 1962 aaKnown RBP7.54□□□□□ -1.2
USP40-216ENST00000485943 TRBV11-1A0A0K0K1C0 115 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 FOXO6A8MYZ6 492 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 B8ZZF3 427 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 FAM227AF5H4B4 570 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 MANBAO00462 879 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 AZIN1O14977 448 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 PCDH7O60245 1069 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 CTNSO60931 367 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 LDB3O75112 727 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 CNOT3O75175 753 aaKnown RBP7.54□□□□□ -1.2
USP40-216ENST00000485943 SEC22BO75396 215 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 GBAP04062 536 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 PRR35P0CG20 571 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 UROSP10746 265 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 COX6A1P12074 109 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 NR1D1P20393 614 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 NT5EP21589 574 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 ALDH3A1P30838 453 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 DNAJB13P59910 316 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 BTG2P78543 158 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 TNFRSF17Q02223 184 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 SLC18A2Q05940 514 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 ZNF844Q08AG5 666 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 TRAF3Q13114 568 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 HEPACAMQ14CZ8 416 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 UNC50Q53HI1 259 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 SOWAHCQ53LP3 525 aaPredicted RBP7.54□□□□□ -1.2
USP40-216ENST00000485943 SH2D4BQ5SQS7 431 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 ATG16L1Q676U5 607 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 OR52E8Q6IFG1 317 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 LETMD1Q6P1Q0 360 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 FAM180AQ6UWF9 173 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 FRMD7Q6ZUT3 714 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 SLC29A4Q7RTT9 530 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 CUZD1Q86UP6 607 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 TMEM151BQ8IW70 566 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 SAMD14Q8IZD0 417 aaPredicted RBP7.54□□□□□ -1.2
USP40-216ENST00000485943 ZCCHC7Q8N3Z6 543 aaKnown RBP7.54□□□□□ -1.2
USP40-216ENST00000485943 RNF175Q8N4F7 328 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 BANPQ8N9N5 519 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 PLPP5Q8NEB5 264 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 OR5L2Q8NGL0 311 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 OR14A16Q8NHC5 309 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 M1APQ8TC57 530 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 TSLPQ969D9 159 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 KLHL29Q96CT2 875 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 VMP1Q96GC9 406 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 BBS4Q96RK4 519 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 MAPKAP1Q9BPZ7 522 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 WDR77Q9BQA1 342 aaPredicted RBP7.54□□□□□ -1.2
USP40-216ENST00000485943 UTP23Q9BRU9 249 aaKnown RBP7.54□□□□□ -1.2
USP40-216ENST00000485943 CNPPD1Q9BV87 410 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 NUDT9Q9BW91 350 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 MRPL1Q9BYD6 325 aaKnown RBP7.54□□□□□ -1.2
USP40-216ENST00000485943 OR8D2Q9GZM6 311 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 ADAP2Q9NPF8 381 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 AGPAT4Q9NRZ5 378 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 MKS1Q9NXB0 559 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 STMN3Q9NZ72 180 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 TIMM22Q9Y584 194 aa7.54□□□□□ -1.2
USP40-216ENST00000485943 DSPP15924 2871 aaKnown RBP7.53□□□□□ -1.2
USP40-216ENST00000485943 MYOCOSA0A1B0GUC4 107 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 C1orf226A1L170 272 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 SAGE2PA6NJ88 616 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 GLOD5A6NK44 160 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 C17orf105B2RV13 164 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 PLPP1O14494 284 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 NPHS1O60500 1241 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 ZFAND5O76080 213 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 EPORP19235 508 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 NTSP30990 170 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 SERPINB5P36952 375 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 CSRP3P50461 194 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 NRG3P56975 720 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 ID2Q02363 134 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 PLAURQ03405 335 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 SRSF11Q05519 484 aaKnown RBP7.53□□□□□ -1.2
USP40-216ENST00000485943 MFAP5Q13361 173 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 RUNX2Q13950 521 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 CASP8Q14790 479 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 ELAVL1Q15717 326 aaKnown RBP7.53□□□□□ -1.2
USP40-216ENST00000485943 CHI3L2Q15782 390 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 ADPRMQ3LIE5 342 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 GALNTL6Q49A17 601 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 ATP6AP1LQ52LC2 224 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 PLAG1Q6DJT9 500 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms